PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187445.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 1058aa MW: 116590 Da PI: 7.7739

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	134	211	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_019187445.1 134 MCQVDNCKENLTNAKDYHRRHKVCEVHSKASKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNKRRRKTQP 211 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence
MEDLSGRVAS PIMIHHQSLA GGLCDPRSVA KKRGLSFQPT QKRDSWNPRA WEWDSARFVA 60 KPVESDAPRP ELQRRSQEQL KEQSFNDKPI CVVEDDETLT LNLGGCVLNS AEEALSRPSK 120 RVRSGSPNTS NYPMCQVDNC KENLTNAKDY HRRHKVCEVH SKASKALVGK QMQRFCQQCS 180 RFHPLSEFDE GKRSCRRRLA GHNKRRRKTQ PEETTSRPML PGSNDAPGNR DLDIVNLLAV 240 IASAQGNNEK RSTNLSPLPD KDQIMQALSK INSLPLPANV VDKLPISGSL NGTNANQLPS 300 SGKARENTAS PSTRDLLAAL SAASAGAASD AVDVQSQRSS QGSDSERSKS ACVGHDTRIN 360 FQKRPPLELS SVGGEKSSTS YQSPEDLDSN IQETHHNLPL RLFTSPAEDV STHTPPVGRK 420 YFSSESSNPS AGRSPSSSPP VVQKLFPVQD SRGSTNPDRI FASREENSNV KEAKTNGCVT 480 SFQLFGGLIT GADSYSIQSS PYQTGYTSSS GSDHSPASLN SDAQDRTGRI MFKLFDKDPS 540 HLPGSLRTQI YHWLSNIPSE MESHIRPGCV VLSLYLSMPS PLWEQLEENL FQYVKALIKD 600 VDPQFWASGR FIVRTDKRLA SHNDGNIHVY KSRRAWRSPK LMCVSPLAVV GGQEISLTLR 660 GTNLNFPGTK IYCTHAGGYR IRSVKTSTWQ DTVCEEIIIG NFMIHGTAPN VLGRFFIEVE 720 NGIRGTSFPI IVADNAVCEE LRCLESDISE AENVRGAALG HGNPGFEMSR SKEVVHFLNE 780 LGWLFQRKCS SSFESQDFKI IRFKFLLIFS VEHDFCALVK TLLDILLEIN LAMKGLENES 840 LEMLLELQLL SRAVKRKCKD MVDLLINFSV SVPGHDVKYI FLPNLPGPGG ITPLHLAACT 900 ANSDDVVDSL TSDPQEIGLH CWNSLVDENG LSPNAYALMR NNHSYNNLVS QKLANRENGH 960 VSVSIGGEID QLEMDEGHNK QAFQVDQGPK SCSKCAAAAM RHSRRGVPGS QGLLYRPYIH 1020 SMLAIAAVCA CVCVFFRGAP DIGSVAPFKW ENLDFGPL

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence

MEDLSGRVAS PIMIHHQSLA GGLCDPRSVA KKRGLSFQPT QKRDSWNPRA WEWDSARFVA  60
KPVESDAPRP ELQRRSQEQL KEQSFNDKPI CVVEDDETLT LNLGGCVLNS AEEALSRPSK  120
RVRSGSPNTS NYPMCQVDNC KENLTNAKDY HRRHKVCEVH SKASKALVGK QMQRFCQQCS  180
RFHPLSEFDE GKRSCRRRLA GHNKRRRKTQ PEETTSRPML PGSNDAPGNR DLDIVNLLAV  240
IASAQGNNEK RSTNLSPLPD KDQIMQALSK INSLPLPANV VDKLPISGSL NGTNANQLPS  300
SGKARENTAS PSTRDLLAAL SAASAGAASD AVDVQSQRSS QGSDSERSKS ACVGHDTRIN  360
FQKRPPLELS SVGGEKSSTS YQSPEDLDSN IQETHHNLPL RLFTSPAEDV STHTPPVGRK  420
YFSSESSNPS AGRSPSSSPP VVQKLFPVQD SRGSTNPDRI FASREENSNV KEAKTNGCVT  480
SFQLFGGLIT GADSYSIQSS PYQTGYTSSS GSDHSPASLN SDAQDRTGRI MFKLFDKDPS  540
HLPGSLRTQI YHWLSNIPSE MESHIRPGCV VLSLYLSMPS PLWEQLEENL FQYVKALIKD  600
VDPQFWASGR FIVRTDKRLA SHNDGNIHVY KSRRAWRSPK LMCVSPLAVV GGQEISLTLR  660
GTNLNFPGTK IYCTHAGGYR IRSVKTSTWQ DTVCEEIIIG NFMIHGTAPN VLGRFFIEVE  720
NGIRGTSFPI IVADNAVCEE LRCLESDISE AENVRGAALG HGNPGFEMSR SKEVVHFLNE  780
LGWLFQRKCS SSFESQDFKI IRFKFLLIFS VEHDFCALVK TLLDILLEIN LAMKGLENES  840
LEMLLELQLL SRAVKRKCKD MVDLLINFSV SVPGHDVKYI FLPNLPGPGG ITPLHLAACT  900
ANSDDVVDSL TSDPQEIGLH CWNSLVDENG LSPNAYALMR NNHSYNNLVS QKLANRENGH  960
VSVSIGGEID QLEMDEGHNK QAFQVDQGPK SCSKCAAAAM RHSRRGVPGS QGLLYRPYIH  1020
SMLAIAAVCA CVCVFFRGAP DIGSVAPFKW ENLDFGPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein