PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187350.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 282aa MW: 30530.1 Da PI: 8.096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_019187350.1 113 YECKTCNRVFPSFQALGGHRASH 135 99**********99999998887 PP
2	zf-C2H2	13.4	0.00022	185	207	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_019187350.1 185 HECSICGAEFTSGQALGGHMRRH 207 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MIKFDDHMVS AIKKRRTKRP RQPSPVALRM ATSSSSSTIQ CRGSDGHFSA AAAGSFDHLS 60 SSSSPSSNSD NNMELSVDLE EDMANCLILL AQGRHDQEPP SPLVAPAANK EVYECKTCNR 120 VFPSFQALGG HRASHKKLKA TSSSSAIPSP ENQESYEDVT TLSLQIPGRV LPPPSPMLSN 180 KNRMHECSIC GAEFTSGQAL GGHMRRHRPL PPNAAATTTS SGGGREDSSS HDTKKSRNLM 240 SFDLNLPAAP AEEERRETTF PFASSKERVI VFSTSTLVDC HY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	18	KKRRTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-41	C2H2 family protein