PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186694.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 280aa    MW: 30998.5 Da    PI: 8.2979
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.85.8e-31158214158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e e+k+  k+rkpylheSRhkhA+rR+R  gGrF
  XP_019186694.1 158 EEPVYVNAKQYHGILRRRQLRAKAELENKV-VKNRKPYLHESRHKHAMRRARDGGGRF 214
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MQQIRRSQMA SDAMSSSGTP ASSCTIGSFT WCQAMVSRNP WNNTLYENSS AVDPGNNATS  60
AHMLWEDNGG MHHTAPEPKG FTELHTSDKN CKVESENVAM SPHHSRPATE HDLMGHSIQC  120
APYPYTEPAF LGAAGGESVV HQSAQGVRMV LPLEVTTEEP VYVNAKQYHG ILRRRQLRAK  180
AELENKVVKN RKPYLHESRH KHAMRRARDG GGRFVNKKKS DSTSNNTPPC SSNVNSSEAK  240
NCISDSHGCP GSEASGMQGS AEYVQWGYEY QRFKVMKDWV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199208RHKHAMRRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.12e-37NF-YA family protein