PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186621.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 362aa MW: 40323.8 Da PI: 7.2988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_019186621.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	24.9	3.6e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C yG+rC++ H+ XP_019186621.1 34 ICTYYQK-GICAYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	28.1	3.5e-09	143	165	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+++Hg XP_019186621.1 143 QPICS-FAAAGSCPRGDNCPYIHG 165 68899.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTYYQK GICAYGSRCR YEHVKVSRLQ 60 SSAPSSSIPS HQNLLSSSGS LTVASATVVN GSGPVPSIAT EHFVLEGLIH TPDTPAWEQK 120 SGPHDLLEID DIVELNSLNP ADQPICSFAA AGSCPRGDNC PYIHGDVCPT CGKHCLHPFR 180 PQEREEHMKT CEKRQNHLEA LKHSQEIECS VCLERVLSKP TAAERKFGIL SECDHPFCIS 240 CIRNWRSSSP TSGLDVNSAL RACPICRKLS YFVIPSVIWY CSKEEKNEIV DNYKAKLSSI 300 DCKHFDFGNG TCPFGTSCFY KHAYRDGRLE EVVLRHLDSE DGSTVIAKNI RLSDFLSNLQ 360 IR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTYYQK GICAYGSRCR YEHVKVSRLQ  60
SSAPSSSIPS HQNLLSSSGS LTVASATVVN GSGPVPSIAT EHFVLEGLIH TPDTPAWEQK  120
SGPHDLLEID DIVELNSLNP ADQPICSFAA AGSCPRGDNC PYIHGDVCPT CGKHCLHPFR  180
PQEREEHMKT CEKRQNHLEA LKHSQEIECS VCLERVLSKP TAAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGLDVNSAL RACPICRKLS YFVIPSVIWY CSKEEKNEIV DNYKAKLSSI  300
DCKHFDFGNG TCPFGTSCFY KHAYRDGRLE EVVLRHLDSE DGSTVIAKNI RLSDFLSNLQ  360
IR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-160	C3H family protein