PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186602.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 199aa    MW: 21760 Da    PI: 8.6386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000362950223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++C ++Fs++  L  H++ H
  XP_019186602.1 29 SCNYCVRRFSNSQALGGHQNAH 50
                    7******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MENNHREEYY TLVGDDDDDD GGDRRRLLSC NYCVRRFSNS QALGGHQNAH KRERAMAKRG  60
KRVGATAAPS PAVTAFGYQP GAASLPLHGL YNRSLGIQDH SMIQKPGSYF GSQSPSPSIY  120
DYNAWTRRRP FDQQPAIVGL PPVSYHVSSS SRNSDMPYRS HTVVDGIGDG FRMDIAGAGA  180
GGSSSKSHQE IDLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-31C2H2 family protein