PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186545.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 735aa MW: 79124.6 Da PI: 6.4123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_019186545.1 309 PCPEFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MCSGPEQSNS ATATNQSCSD TKSSMKDMCK DTIETDDAFS SLLELAANND VDAFKRSIEC 60 DSCGVDSVGL WLVRKKGSKQ VVNEERTPLM VAATYGSVDV LRLILAQPGV DVNRACGPDK 120 ITALHCATSG GSVNASEVVK LLLSAGADPI VEDVNGQRPA DVIAVPPKLP GGRASLEELL 180 LNNTSDGSVG ECNLRVSVTT SNASSPILSS SPDNGSPCSP SDLVSYPRES KFCDVPANSA 240 PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTA CARRVCFFAH 360 TPEELRPLYV STGSAVPSPR SAAATASVMD MAAALSLLPG SPSSHPVMSP SFNQPMSPTA 420 NGMSHSPAAA WPQPNVPTLH LPGSNLQSSR LRSSLSARDI LPEDLNMLQD FDAQQLILND 480 LACFSQSRHN SASLNHSCRS KTLTPSNLEE LFSNEVASSP RYSDQAAAAS GVFSPSHKSA 540 VFNQLQQQQR MLSPINTSVF SPKNVEHHLL QAPFAVSSPG RMSPRSVDPI SPMSGRLSPF 600 AQSEKQHQQL RCFSSRDLGS NNPSIVGSPS AAAAGNSWSN LGSLNSNIDW SINGDKLRHP 660 GRSSSEQLNN NNGEGPDLSW VQSLVKESPP EMMKDKLAAP ISGTAATPSG SQIDSMDPHS 720 VLGAWLEQMQ LDQLV

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MCSGPEQSNS ATATNQSCSD TKSSMKDMCK DTIETDDAFS SLLELAANND VDAFKRSIEC  60
DSCGVDSVGL WLVRKKGSKQ VVNEERTPLM VAATYGSVDV LRLILAQPGV DVNRACGPDK  120
ITALHCATSG GSVNASEVVK LLLSAGADPI VEDVNGQRPA DVIAVPPKLP GGRASLEELL  180
LNNTSDGSVG ECNLRVSVTT SNASSPILSS SPDNGSPCSP SDLVSYPRES KFCDVPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTA CARRVCFFAH  360
TPEELRPLYV STGSAVPSPR SAAATASVMD MAAALSLLPG SPSSHPVMSP SFNQPMSPTA  420
NGMSHSPAAA WPQPNVPTLH LPGSNLQSSR LRSSLSARDI LPEDLNMLQD FDAQQLILND  480
LACFSQSRHN SASLNHSCRS KTLTPSNLEE LFSNEVASSP RYSDQAAAAS GVFSPSHKSA  540
VFNQLQQQQR MLSPINTSVF SPKNVEHHLL QAPFAVSSPG RMSPRSVDPI SPMSGRLSPF  600
AQSEKQHQQL RCFSSRDLGS NNPSIVGSPS AAAAGNSWSN LGSLNSNIDW SINGDKLRHP  660
GRSSSEQLNN NNGEGPDLSW VQSLVKESPP EMMKDKLAAP ISGTAATPSG SQIDSMDPHS  720
VLGAWLEQMQ LDQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein