PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186499.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 246aa MW: 26619.9 Da PI: 8.367

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg++F++ L H +H XP_019186499.1 85 YECKTCGRTFPTFQALGGHRTSH 107 99**********99998888777 PP
2	zf-C2H2	14.9	7.4e-05	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019186499.1 165 HECSYCGAEFSSGQALGGHMRRH 187 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MTPPHSSATS EPIPAAPTPE DEDMARCLML LSQGGGVSRH PPAIPKSPLY KEEESGGGSK 60 FCSKKYIETT TVGGGGGVKV GMYVYECKTC GRTFPTFQAL GGHRTSHTKE KPPLTTVETA 120 AVKRPLSLYD EEDINPYPFN KTPKISPPFS SLHFYDSAKS SPRIHECSYC GAEFSSGQAL 180 GGHMRRHRNS TAAAAASQLS PSSSSFEKRV LQKEENNGKG LNLDLNLLPA GEDNQDHRRA 240 REPIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-33	C2H2 family protein