PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186336.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 390aa MW: 43650 Da PI: 4.6568

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.3	5.3e-15	60	118	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++n+ k+ ++++lg + ++e Aa+ ++ a++k++g XP_019186336.1 60 AYRGVTRHRWTGRYEAHLWDkTTWNNiqnKKgRQIYLGAYESEEAAARTYDLAALKYWG 118 69****************666699977447***********************98 PP
2	AP2	51	3.6e-16	161	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg+f t eeAa+a++ a+ +++g XP_019186336.1 161 SKYRGVARHHHNGRWEARIGRVL--G-TKYLYLGTFSTQEEAAEAYDMAAIEYRG 212 89**99******98841..2.5***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MKRSAPSSSS PSSSSSSSSS CIQLPPAGQP VASPEPRPAK RSRAKRTANA DSTPARRSSA 60 YRGVTRHRWT GRYEAHLWDK TTWNNIQNKK GRQIYLGAYE SEEAAARTYD LAALKYWGAS 120 ATLNFPVETY DKEIEEMQPL SKEEYLASLR RQSSGFSRGV SKYRGVARHH HNGRWEARIG 180 RVLGTKYLYL GTFSTQEEAA EAYDMAAIEY RGPNAVTNFD VSRYADVLNK IREREQLQQM 240 AGNPESSVEV QSGEQSDQDQ ENAGEKQEGA EEVNNEEHPW KPEFPKMEEE VVGVLEPRVP 300 EMEFAPPPPP VEASSAAMLM MDPAAEEHDS AWNVFLDPGF EQFLNTSDDL FSIFNSPFDD 360 DIDSIFGEQL IEKEFVQAGI LSSVNEFPAT

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MKRSAPSSSS PSSSSSSSSS CIQLPPAGQP VASPEPRPAK RSRAKRTANA DSTPARRSSA  60
YRGVTRHRWT GRYEAHLWDK TTWNNIQNKK GRQIYLGAYE SEEAAARTYD LAALKYWGAS  120
ATLNFPVETY DKEIEEMQPL SKEEYLASLR RQSSGFSRGV SKYRGVARHH HNGRWEARIG  180
RVLGTKYLYL GTFSTQEEAA EAYDMAAIEY RGPNAVTNFD VSRYADVLNK IREREQLQQM  240
AGNPESSVEV QSGEQSDQDQ ENAGEKQEGA EEVNNEEHPW KPEFPKMEEE VVGVLEPRVP  300
EMEFAPPPPP VEASSAAMLM MDPAAEEHDS AWNVFLDPGF EQFLNTSDDL FSIFNSPFDD  360
DIDSIFGEQL IEKEFVQAGI LSSVNEFPAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	1e-102	AP2 family protein