PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186327.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 392aa MW: 41088.4 Da PI: 9.0174

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	140	6.7e-44	89	164	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ XP_019186327.1 89 RCQVEGCNADLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 164 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MELGSNSSSS SSGKTSDSSL NIGLKIGQKV YFKDVGAGSG GLVKTGSGSS SAAAGGGGSG 60 SGSALPPPPP TSPAKKGRSG VVQGGQPPRC QVEGCNADLS DAKAYYSRHK VCGMHSKSPT 120 VIVAGLEQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGALL SSRYPGLSSP 180 LLDSSSKGSG SFLMDFASYQ NPGGRDSWPN TRAFGRGWDG QTTSPGRFLE QRWQSGSEDP 240 PPELLLQGAA APGTAYTGPN VPSGECFGGV LSSTRALSLL SNQPWGSRNQ HPLALGVNSL 300 LATDATTPTV HQDAAAINEF SHPPWGFKGG QPTSSSTEML PDLGLGKISH PADSHYSGEL 360 GMAQQTETGR EYVGLEQSRG YDSTIQNVHW TL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MELGSNSSSS SSGKTSDSSL NIGLKIGQKV YFKDVGAGSG GLVKTGSGSS SAAAGGGGSG  60
SGSALPPPPP TSPAKKGRSG VVQGGQPPRC QVEGCNADLS DAKAYYSRHK VCGMHSKSPT  120
VIVAGLEQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGALL SSRYPGLSSP  180
LLDSSSKGSG SFLMDFASYQ NPGGRDSWPN TRAFGRGWDG QTTSPGRFLE QRWQSGSEDP  240
PPELLLQGAA APGTAYTGPN VPSGECFGGV LSSTRALSLL SNQPWGSRNQ HPLALGVNSL  300
LATDATTPTV HQDAAAINEF SHPPWGFKGG QPTSSSTEML PDLGLGKISH PADSHYSGEL  360
GMAQQTETGR EYVGLEQSRG YDSTIQNVHW TL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-49	SBP family protein