PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186111.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 426aa MW: 46937.1 Da PI: 8.3572

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019186111.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	12.7	0.00038	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +++ XP_019186111.1 154 WKCDKCSKKYAVQSDWKAHAKVC 176 58*****************9987 PP
3	zf-C2H2	11.2	0.0012	184	202	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + XP_019186111.1 184 DCGTIFSRRDSFVTHRAFC 202 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MPNNISEGDG GGAASFSSEN NGEEEAALQT LDQFGSTDPH QLEPSISKKR RKLPGNPDPS 60 AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRMS SSEMKKKVYI 120 CPEASCIHHN PARALGDLTG IKKHYSRKHG EKRWKCDKCS KKYAVQSDWK AHAKVCGTKE 180 YTCDCGTIFS RRDSFVTHRA FCDALAEENT KVLNTHGLQD ASDLNPSSPT NLPEIIQSDM 240 MKTPSRDFLP APPPPKPLNM APSMFSGSSP TTLFSPPKIM PAASSSFLPN MSATALLQKA 300 AQIGATTSTN NIVCSPMVQR GFGSSMEPSL INDGIQVQTD KSQLAGVISG FYYHQNQNLS 360 SGLDLQKVAG NKEMMRRDEN LTVDFLGVGG RNFHELQHQE MGLENEAVIS QQRMQGLSAV 420 WDVREV

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MPNNISEGDG GGAASFSSEN NGEEEAALQT LDQFGSTDPH QLEPSISKKR RKLPGNPDPS  60
AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRMS SSEMKKKVYI  120
CPEASCIHHN PARALGDLTG IKKHYSRKHG EKRWKCDKCS KKYAVQSDWK AHAKVCGTKE  180
YTCDCGTIFS RRDSFVTHRA FCDALAEENT KVLNTHGLQD ASDLNPSSPT NLPEIIQSDM  240
MKTPSRDFLP APPPPKPLNM APSMFSGSSP TTLFSPPKIM PAASSSFLPN MSATALLQKA  300
AQIGATTSTN NIVCSPMVQR GFGSSMEPSL INDGIQVQTD KSQLAGVISG FYYHQNQNLS  360
SGLDLQKVAG NKEMMRRDEN LTVDFLGVGG RNFHELQHQE MGLENEAVIS QQRMQGLSAV  420
WDVREV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-109	C2H2 family protein