PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185971.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27178 Da    PI: 9.8128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s+r+ ++ kR+ g+ KK +EL vLCda++a+i++ss
  XP_019185971.1 11 IVNQSKRKASYHKRKRGVVKKLNELTVLCDADAAMIMYSS 50
                    78************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MARRRLRLAY IVNQSKRKAS YHKRKRGVVK KLNELTVLCD ADAAMIMYSS FEQGPAIWPT  60
GERVQELIAR FMQLPDVQQT RRMMSQDSFL AERLEKLGTL LLKLKRENRE KEMNALMHKI  120
FSGEQIIDYL SSVDLNDLGW VLNTNIAESV MRFERDPSTP APFLPAAPSL ATASPPVLGS  180
GTSNVVAPAE VFSGQSYQGT VGIQTPMSAN INPGTAWSYQ NWAFMNDNNQ NDPTQGRPGP  240
STQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKASYHKRKRGVVKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-25M-type_MADS family protein