PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185684.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 390aa MW: 43154 Da PI: 5.5261

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1e-06	20	58	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39 r+C+ + + + +C+++ +lC C ++H+ H++ XP_019185684.1 20 RVCDVCRSVTCTVYCRTDAAYLCGGCDAHIHRTataHER 58 79****99*******************77888876 PP
2	zf-B_box	27.6	5.9e-09	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C H+ H +vp+ XP_019185684.1 59 VWVCEACERAPAAFLCKADAASLCATCDADVHSAnplarrHHRVPI 104 689*****************************66889999877775 PP
3	CCT	68.8	1.4e-23	321	364	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR++GrF+k++ XP_019185684.1 321 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIRGRFAKRT 364 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MLAEEKGYGS LDLEVNKWAR VCDVCRSVTC TVYCRTDAAY LCGGCDAHIH RTATAHERVW 60 VCEACERAPA AFLCKADAAS LCATCDADVH SANPLARRHH RVPILPIPST LYGPPATGAV 120 GSVMIRPTAG DTPEDDDDEF LTHDAGETTI DEDDEDEAAS WLLLNPTPAK NNDNNNNIKE 180 ESENACIDLL EYSSCQENQF NDHHYNLNQP HHYSIPEKNM SYGGGDSVVP NKTHLQYYTH 240 TQTHHGSFQL QGMEYETSTP GYGYPAFISH SVSVSSMDVG VVPESTTSDV SISHSRPPKG 300 TIDLFSGPPV PMASQLGPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIRGRF 360 AKRTDAEGEV DQMFFAPSMA ESGYGIVPLL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MLAEEKGYGS LDLEVNKWAR VCDVCRSVTC TVYCRTDAAY LCGGCDAHIH RTATAHERVW  60
VCEACERAPA AFLCKADAAS LCATCDADVH SANPLARRHH RVPILPIPST LYGPPATGAV  120
GSVMIRPTAG DTPEDDDDEF LTHDAGETTI DEDDEDEAAS WLLLNPTPAK NNDNNNNIKE  180
ESENACIDLL EYSSCQENQF NDHHYNLNQP HHYSIPEKNM SYGGGDSVVP NKTHLQYYTH  240
TQTHHGSFQL QGMEYETSTP GYGYPAFISH SVSVSSMDVG VVPESTTSDV SISHSRPPKG  300
TIDLFSGPPV PMASQLGPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIRGRF  360
AKRTDAEGEV DQMFFAPSMA ESGYGIVPLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	7e-91	CO-like family protein