PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185663.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 521aa MW: 57443.9 Da PI: 6.2979

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.8e-14	239	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_019185663.1 239 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 298 57*****************666664478446******99***********98 PP
2	AP2	49.8	8.3e-16	341	392	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_019185663.1 341 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 392 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MAPENNWLSF SLSPQFHHQS TIELNASFDG SSSTDSQHYY FSDNFYANGW ANQKVEVMYS 60 EAENHENEVS GNNPDGGESC IFQGLMESQI HHHHQAAPPP PKLEDFLGGD TLVRYSDSQT 120 ETQDSSLTHL YDQGGSSAAA AAYFNDHQDF RAVAGFQAFS TNSGSEVDDS ASMARTQVMA 180 GGEFTTSQCI ESGHELAYSH CPTGSLSLAV NTHNSEKAIV SVDSESSKKI SDTFGQRTSI 240 YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWGPT 300 ATTNFPVTNY SKELEDMKHM SKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG 360 RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVDAIM NSSLPIGGAA 420 KRLKLSLESD QKTSMAVSQH EQVGNNNNNS SSNINFGAIQ PVSAIPCGIP FDTTTPFYHH 480 SHLFHPLHPT NPVGADSSGA NAMAPLQQPT SAGFFIWPQS Y

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MAPENNWLSF SLSPQFHHQS TIELNASFDG SSSTDSQHYY FSDNFYANGW ANQKVEVMYS  60
EAENHENEVS GNNPDGGESC IFQGLMESQI HHHHQAAPPP PKLEDFLGGD TLVRYSDSQT  120
ETQDSSLTHL YDQGGSSAAA AAYFNDHQDF RAVAGFQAFS TNSGSEVDDS ASMARTQVMA  180
GGEFTTSQCI ESGHELAYSH CPTGSLSLAV NTHNSEKAIV SVDSESSKKI SDTFGQRTSI  240
YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWGPT  300
ATTNFPVTNY SKELEDMKHM SKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG  360
RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVDAIM NSSLPIGGAA  420
KRLKLSLESD QKTSMAVSQH EQVGNNNNNS SSNINFGAIQ PVSAIPCGIP FDTTTPFYHH  480
SHLFHPLHPT NPVGADSSGA NAMAPLQQPT SAGFFIWPQS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-166	AP2 family protein