PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185511.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 247aa    MW: 27762.1 Da    PI: 5.5875
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.8e-37101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC++dC+la+yfpa+qpk+f+n+h+lFG+sn+lk+lk++++++ + dam+s+++eA++r r Pv+G+v+ i  l+++l+q++ el
  XP_019185511.1  10 ACAACKHQRRKCSSDCALAQYFPATQPKTFQNAHRLFGVSNILKTLKNIDDDDkKADAMKSIIFEANMRHRFPVHGCVEYICYLRHRLSQAEDEL 104
                     7************************************************7666499*************************************** PP

          DUF260  95 allkee 100
                       ++ +
  XP_019185511.1 105 RCVRGQ 110
                     998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MTVKGGNSQA CAACKHQRRK CSSDCALAQY FPATQPKTFQ NAHRLFGVSN ILKTLKNIDD  60
DDKKADAMKS IIFEANMRHR FPVHGCVEYI CYLRHRLSQA EDELRCVRGQ LERCREQLLK  120
SMDSNDDNCS DGGYGWTDVL SSDRTNLSSL DPISCAEYND LSSALIFPHE NFPDYYGLIP  180
GDEPATKEAS NSSSVSSSQT DLRNAAADLI QEDDADDTQE MHAFCKVLLR SLWRHLCLKL  240
DLDCKCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-35LBD family protein