PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185193.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 326aa MW: 36587 Da PI: 6.9547

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++Cv+apyfp +qp+kfan+hk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++ +l+ XP_019185193.1 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANIHKVFGASNVSKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISILQQRLKQVQRDLN 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_019185193.1 102 TAKRE 106 99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MSSSSSPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANIH KVFGASNVSK LLNELNASQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ QRLKQVQRDL NTAKRELATY IGPNALAPLI 120 PQTGFMQHPN HPSSSGVMQY NMQPMMMGVP MGLPNSNQLI IRDQQIHQSH PQQQLIESHQ 180 LMIGEADLIG SYEQQHQNPQ QFDLMRFNGF ESGGPVTATG FHQINATPAA GISPSLGLGA 240 YDNPYPIQQQ PSQQEQQHCH PHHHLHHPDH HDHHIQLQPQ LLLQQQQQLP QQQIQHQQPP 300 PQPETPQQQQ QRATSDEGGR SVGPLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-76	LBD family protein