PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185151.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 368aa MW: 39867.1 Da PI: 6.776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.3e-07	149	170	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_019185151.1 149 FCEICGKGFKRDANLRMHMRAH 170 6*******************99 PP
2	zf-C2H2	13.2	0.00027	236	259	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs + +Lk+H + + XP_019185151.1 236 YSCNRCNkKSFSVPADLKSHAKHC 259 99******************9876 PP
3	zf-C2H2	11.8	0.00073	267	283	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_019185151.1 267 SCGTSFSRKDKLFGHMA 283 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MSFFGDLRHT PPPTKPPGAA AVGGADPLLN LANVQARMDS LHKFLSTSVT SNILLGEEQM 60 GMVSTEISAA IHQIIVNGAA LLASTQAAAD EVSPGVSAQV IDHKSTNKRL FSEIVDQIAV 120 AAEDGGSGGE DWEIIELDAV ELLAEHIHFC EICGKGFKRD ANLRMHMRAH GNQFKTAEAL 180 AKPGKCGGES GPVRKTRFSC PFVGCSRNKT HKKFRPLKSA ICVKNHFRRS HCPKLYSCNR 240 CNKKSFSVPA DLKSHAKHCG ETKWKCSCGT SFSRKDKLFG HMALFEGHMP AVEDEKAAAA 300 VPMAEDDEEE EDTTAKKDTN SGGSDNAFLD RLLKDDCDSI DNYCFQEILG WPSPNAANGL 360 GLETFFGL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MSFFGDLRHT PPPTKPPGAA AVGGADPLLN LANVQARMDS LHKFLSTSVT SNILLGEEQM  60
GMVSTEISAA IHQIIVNGAA LLASTQAAAD EVSPGVSAQV IDHKSTNKRL FSEIVDQIAV  120
AAEDGGSGGE DWEIIELDAV ELLAEHIHFC EICGKGFKRD ANLRMHMRAH GNQFKTAEAL  180
AKPGKCGGES GPVRKTRFSC PFVGCSRNKT HKKFRPLKSA ICVKNHFRRS HCPKLYSCNR  240
CNKKSFSVPA DLKSHAKHCG ETKWKCSCGT SFSRKDKLFG HMALFEGHMP AVEDEKAAAA  300
VPMAEDDEEE EDTTAKKDTN SGGSDNAFLD RLLKDDCDSI DNYCFQEILG WPSPNAANGL  360
GLETFFGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-78	C2H2 family protein