PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185117.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 305aa    MW: 34690.9 Da    PI: 7.1099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++v+++G g+W+++a++ g+ R++k+c++rw +yl
   XP_019185117.1 16 KGLWSPEEDEKLYNYVRKFGVGCWSSVAKHAGLQRCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding45.22.1e-1469113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE+++++ +++ lG++ W+ Ia++++ gRt++++k++w++ 
   XP_019185117.1  69 RGLFSPEEEDIILGLHEVLGNK-WAQIAARLP-GRTDNEIKNFWNSC 113
                      7889******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MMGRHSSGMV KQKLRKGLWS PEEDEKLYNY VRKFGVGCWS SVAKHAGLQR CGKSCRLRWI  60
NYLRPDLKRG LFSPEEEDII LGLHEVLGNK WAQIAARLPG RTDNEIKNFW NSCLKKKLIK  120
RGIDPNTHKP IITQTINTSS SSSKSCAEDH NNNSSTIIPK PTLPLNFSEF EQALRPEPQA  180
FDPLFLYNSE QYCHGFSTLL PSLENFENMS SSSNIMVNNN NGATFPNWET CENNNNTADY  240
SVSAAHHQFP FSAKSEGCSW LQEGLHHRHS PDHDFSEYSL PALPQDLSGE ENNLEFFMSC  300
TKFNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-72MYB family protein