PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185072.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 168aa MW: 18614.1 Da PI: 7.2998

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.5	6.5e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+ XP_019185072.1 10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVSSLAYEAEARVRDPVYGCVGAISYLQRQVERLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_019185072.1 105 AANA 108 9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MASSSSYSSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP 60 HQREDAVSSL AYEAEARVRD PVYGCVGAIS YLQRQVERLQ KELDAANADL IRYACNDVAP 120 PPPPPQMAPP PPQGLRRRMS MGMHYPNYPF PWDDENNNYP QGGGEGSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	6e-70	LBD family protein