PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019185048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22448.8 Da PI: 10.1706 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.6 | 2.4e-21 | 21 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 rien+ +r+v+fskRr g++KKA+E+S+LC++e++v++f ++ k+y++ XP_019185048.1 21 RIENDVQRNVSFSKRRFGLFKKASEISTLCGVEILVVVFPlNQAKVYTF 69 9**************************************8345689998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MSSNNSTRRV SRGRQRIPLQ RIENDVQRNV SFSKRRFGLF KKASEISTLC GVEILVVVFP 60 LNQAKVYTFG SLSVPSVLRK YIAESENRTI EANDAEELLR SQEEANIRNM NHQINVLEAQ 120 IQHEMNVNKA LTEAAKGMPS ISNLPLAELL PMKQKMEILR SKVLQMLNQP IMPIQTQAMP 180 TMTTTQSDND VHPSGATPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-20 | M-type_MADS family protein |