PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184831.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 610aa MW: 71409.6 Da PI: 8.1812

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.9	2.3e-25	80	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YAk+ GF +rk++ +ks++n+ ++ ++fvCskeg+r+++ + +++++ ++ etr+gCka++ v++++++kw ++k+ +HnH la XP_019184831.1 80 CYTNYAKHEGFGIRKNRIQKSRKNQMVIGQEFVCSKEGYRAKKYLErDNRKKPPSDETRMGCKAMIYVSRKDEDKWIISKFTRDHNHVLA 169 69*************************************998874566667999*****************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MATFHDNKDH NIVEIEEDHG CEITTELSEN NHDELVNSGE FNIVEIEQNA SANAKSDVNN 60 ETIELCIGME FQSLDDALMC YTNYAKHEGF GIRKNRIQKS RKNQMVIGQE FVCSKEGYRA 120 KKYLERDNRK KPPSDETRMG CKAMIYVSRK DEDKWIISKF TRDHNHVLAS PSSARFHRVH 180 RKRTKSQRNL IDVLDESGIR PSKIMSVLVT ESGGIDRVGC TERDIQNYLS NKRQKQLEKG 240 DAQAMLYKMP FVPFTGVNHH HQSILFGCAL LWDETVETFV WLLNTWLGAM DGCHPKTIIT 300 DQDTAITTAI AKVLPNTAHH FCMWHIEKKF PENLSHVYHK FDDFKFQFSH CIHRIYIPND 360 FEVEWKKILD KYGLRGNSWL EKLYSIREKW IPAYVRTSFC AGMSTTQRSE SMNKYFKDYI 420 NANTPISKFV VQYDKALDAR YNKEREKTFK TLNSKPILKT LYPMEEEASK VYTRKMFRMF 480 QDELIHSQQF VAEKIITIEH ESVYRVHEFD KEKSEYIVTF MSSSTTIECS CHMFEFLGIL 540 CRHQLMVLIK KNVYSLPKLY ILKRWTTDAK KGEITRTSNK EEMTDVNMCS TTLFNNIMVH 600 SLQLSEKASR

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MATFHDNKDH NIVEIEEDHG CEITTELSEN NHDELVNSGE FNIVEIEQNA SANAKSDVNN  60
ETIELCIGME FQSLDDALMC YTNYAKHEGF GIRKNRIQKS RKNQMVIGQE FVCSKEGYRA  120
KKYLERDNRK KPPSDETRMG CKAMIYVSRK DEDKWIISKF TRDHNHVLAS PSSARFHRVH  180
RKRTKSQRNL IDVLDESGIR PSKIMSVLVT ESGGIDRVGC TERDIQNYLS NKRQKQLEKG  240
DAQAMLYKMP FVPFTGVNHH HQSILFGCAL LWDETVETFV WLLNTWLGAM DGCHPKTIIT  300
DQDTAITTAI AKVLPNTAHH FCMWHIEKKF PENLSHVYHK FDDFKFQFSH CIHRIYIPND  360
FEVEWKKILD KYGLRGNSWL EKLYSIREKW IPAYVRTSFC AGMSTTQRSE SMNKYFKDYI  420
NANTPISKFV VQYDKALDAR YNKEREKTFK TLNSKPILKT LYPMEEEASK VYTRKMFRMF  480
QDELIHSQQF VAEKIITIEH ESVYRVHEFD KEKSEYIVTF MSSSTTIECS CHMFEFLGIL  540
CRHQLMVLIK KNVYSLPKLY ILKRWTTDAK KGEITRTSNK EEMTDVNMCS TTLFNNIMVH  600
SLQLSEKASR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-136	FAR1 family protein