PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019184389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 14671.8 Da PI: 7.3626 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dC++ pyfp +p++f vh++FGasnv k+l++++e+er d++ sl+yeA++r++dPvyG+vg+i+ l++q+ + +l+ XP_019184389.1 8 RCAACKQLRRRCPSDCIFLPYFPPIDPQRFSSVHRIFGASNVAKMLQKVEEHERGDVAVSLYYEAHCRIQDPVYGCVGIITFLHEQIYDFQCQLS 102 6*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_019184389.1 103 KVEA 106 9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence |
MSSSSNNRCA ACKQLRRRCP SDCIFLPYFP PIDPQRFSSV HRIFGASNVA KMLQKVEEHE 60 RGDVAVSLYY EAHCRIQDPV YGCVGIITFL HEQIYDFQCQ LSKVEADIQA VKSQQLGHLQ 120 LQFPENFC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-44 | LBD family protein |