PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019184388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 14156.2 Da PI: 8.2845 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.2 | 3.7e-40 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dC+l pyfp ++p++f +vh++FGasnv k+l++++e++r d+++sl+yeA++r++dPvyG+vg+i+ l++q+ + + +la XP_019184388.1 8 RCAACKQLRRRCPSDCILLPYFPPTDPQRFSYVHRIFGASNVAKMLQKVEEHHRGDVAESLYYEAHCRIQDPVYGCVGIITILHEQIYNFQCQLA 102 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019184388.1 103 KVEAE 107 99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MSSSSNSRCA ACKQLRRRCP SDCILLPYFP PTDPQRFSYV HRIFGASNVA KMLQKVEEHH 60 RGDVAESLYY EAHCRIQDPV YGCVGIITIL HEQIYNFQCQ LAKVEAEIQA AKAQQQGRLQ 120 PQFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-41 | LBD family protein |