PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019184334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17888.4 Da PI: 10.3674 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.5 | 4.8e-25 | 1 | 42 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rqvt +kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_019184334.1 1 RQVTSCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 42 8****************************************8 PP | |||||||
2 | K-box | 101.5 | 1.2e-33 | 61 | 155 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ s++ea+++ +qqe+akL+++i+++q++++++lGe+L+ L++keL++Le ++ek++ ++RskKnell+++ie +qk+e elq++n++Lr+k+ XP_019184334.1 61 TNTGSVSEANTQFYQQESAKLRRQIREIQTSNKQILGESLGVLNHKELKNLEGKVEKAIGRVRSKKNELLFSEIELMQKREIELQNANMYLRAKV 155 334449**************************************************************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
RQVTSCKRRN GLLKKAYELS VLCDAEVALI VFSTRGRLYE YANNSVRATI DRYKKHHSDS 60 TNTGSVSEAN TQFYQQESAK LRRQIREIQT SNKQILGESL GVLNHKELKN LEGKVEKAIG 120 RVRSKKNELL FSEIELMQKR EIELQNANMY LRAKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 3e-87 | MIKC_MADS family protein |