PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184311.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 685aa    MW: 77384.2 Da    PI: 8.8965
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.5e-2170168190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     kfY++Y++  GF++r ++ k++++n+ i++r++vCs++g +   ++k          ++k+rr+r ++r+gC+akl  k+ ++g+++v+ + +eH
  XP_019184311.1  70 KFYKTYGRAGGFHIRYNNVKRNRDNQ-IISRHLVCSRQGAKGGGQSKpilevsvgndNKKQRRRRISNRVGCRAKLGFKRVSTGEFMVSIFIEEH 163
                     6*****************99995555.***************999999********99999********************************** PP

            FAR1  86 nHela 90 
                     nH+l+
  XP_019184311.1 164 NHSLC 168
                     ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    
MATHGAAPPA IAAAGMTADT GLLRSDSGIG DATHSTRINT TFKQYWIPNV DANLLPTVEQ  60
RFNTLDEGIK FYKTYGRAGG FHIRYNNVKR NRDNQIISRH LVCSRQGAKG GGQSKPILEV  120
SVGNDNKKQR RRRISNRVGC RAKLGFKRVS TGEFMVSIFI EEHNHSLCSE GAKLFLRCNR  180
KLNVAQQAFL ANCVKVNVGS SAGFKLCKEV AGSFENVGAT EMEFHNFKRD LQKYVDVVDG  240
ELIIERLKTK RKLCDSFFFD YHLNEENRLS RLFWADPIGR GSFSCYGDVI SFDATYSTNR  300
YNLVFVPFTG VDNHKRSITY AAGLITREDV ESYSWLLERL ISATTWSPLC VVTDQDPAMK  360
IAIDQVIPEC RHRYYMWHIM TKVSEKVGPG LAQNEVFRKS LNDIVWNERI SSSDFEAQWQ  420
LLMEKYNLTE HRWFRKLFVE REHWIPAFFS DLPLSGLVRT TSRSEAQNSV YGKFTRPCSS  480
LVQFYIQFES VLETQHHNQT KLDTKCEGYL PEFKTPLALE RNAAQLFTLA IFYDMQEEIE  540
AACFNCQVVG IREVGGDIFY DITNDSPAKY TVRYTPDGCS TFCSCKMFQR MGLICRNMFL  600
VFKSAQLKQL SAQYIVLKEL SVEFASDGSS TGTAKGNSAA IEALCGVQPP AFITIKAPAQ  660
AKNKGSGKRL KSSREIAIEN SSKVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-81FAR1 family protein