PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184298.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 916aa MW: 100707 Da PI: 6.9386

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.4	2.7e-18	326	426	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_019184298.1 326 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSRMD-PEGK 418 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_019184298.1 419 LLMGFRKA 426 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MGSKECMNGL CRANSLVQWK KGWPLRSGEL STLCITCGTA YEQLVFCDVF HSNDTGWREC 60 SSCGKRLHCG CIASSSLLEL LESGGVSCIS CVKSSQLHNT LTQEKDKGCT ANSLGEEHST 120 SGGSQMNGCN IEKTTNMQFD DGSESLSRKP SLPSQYDTRS NPLCQIKLEE AFNPTGEGGS 180 TCPLNFNQGL FESSQPSKSK LYNTHIGAKE VPGSPVQTNL SISLSVPSGN ANIGGETVVE 240 ERELGKMISS FAQGSRSRHI VPKPPKSSFA AGLETTASMV PQIRVARPPV EGRIKNQLLP 300 RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG 360 LPLRIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVIF SRMDPEGKLL 420 MGFRKASNAI PAQDANLGVI PCGAFSNETF FSAVTESVPI MSGYSGMLQS FRGSREASLN 480 ASSKHLSGGD LSWYLNEKIG NKNGDGPHSL SLMTSERKRS RNLGSKSKRL LMDRQDALEL 540 KLSWEEIQDM LRPPLSARLS TVMIEDHEFE EYEEPPVFAK RSIFTVRLSG EQEQWAQCDN 600 CFKWRRLPAE YLLPPQWTCR DNIWDVGRCS CSASDELAPQ ELECLLKMDK DLKKRRNATS 660 HKSVNTKGSC DVDAQANGGG PRDDVQEPGS SSVATTTKHP RHRPGCSCIV CIQPPSGKGK 720 HKPSCSCNVC MTVKRRFKTL MMRKKKRQSE REAELAQRNQ FVWGAKEEAE VDSIPRQVKV 780 QLHLSEKERS GSDLQPSGGQ SSDQLHKIPE SGSGKAPLDL NCHPDREVAG SSSRVSMVSL 840 LQRASLPLEN YLKQNGLMSL ASEQQGSSGS QAVVPQDAGE NEVQAHEDQC NATAVEEHDS 900 DFCDELSERD ESAKEP

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MGSKECMNGL CRANSLVQWK KGWPLRSGEL STLCITCGTA YEQLVFCDVF HSNDTGWREC  60
SSCGKRLHCG CIASSSLLEL LESGGVSCIS CVKSSQLHNT LTQEKDKGCT ANSLGEEHST  120
SGGSQMNGCN IEKTTNMQFD DGSESLSRKP SLPSQYDTRS NPLCQIKLEE AFNPTGEGGS  180
TCPLNFNQGL FESSQPSKSK LYNTHIGAKE VPGSPVQTNL SISLSVPSGN ANIGGETVVE  240
ERELGKMISS FAQGSRSRHI VPKPPKSSFA AGLETTASMV PQIRVARPPV EGRIKNQLLP  300
RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG  360
LPLRIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVIF SRMDPEGKLL  420
MGFRKASNAI PAQDANLGVI PCGAFSNETF FSAVTESVPI MSGYSGMLQS FRGSREASLN  480
ASSKHLSGGD LSWYLNEKIG NKNGDGPHSL SLMTSERKRS RNLGSKSKRL LMDRQDALEL  540
KLSWEEIQDM LRPPLSARLS TVMIEDHEFE EYEEPPVFAK RSIFTVRLSG EQEQWAQCDN  600
CFKWRRLPAE YLLPPQWTCR DNIWDVGRCS CSASDELAPQ ELECLLKMDK DLKKRRNATS  660
HKSVNTKGSC DVDAQANGGG PRDDVQEPGS SSVATTTKHP RHRPGCSCIV CIQPPSGKGK  720
HKPSCSCNVC MTVKRRFKTL MMRKKKRQSE REAELAQRNQ FVWGAKEEAE VDSIPRQVKV  780
QLHLSEKERS GSDLQPSGGQ SSDQLHKIPE SGSGKAPLDL NCHPDREVAG SSSRVSMVSL  840
LQRASLPLEN YLKQNGLMSL ASEQQGSSGS QAVVPQDAGE NEVQAHEDQC NATAVEEHDS  900
DFCDELSERD ESAKEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	649	656	DKDLKKRR
2	734	745	KRRFKTLMMRKK
3	734	747	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein