PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019184210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 36838.9 Da PI: 6.4307 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 87 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg XP_019184210.1 87 FKTKLCCKFRA-GVCPYITNCNFAHG 111 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.4 | 7.8e-06 | 164 | 189 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C F H+ XP_019184210.1 164 YKGRHCKKFYTEEGCPYGDSCAFLHD 189 78888********************7 PP | |||||||
3 | zf-CCCH | 43 | 7.4e-14 | 224 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_019184210.1 224 WKTRICNKWETTGYCPFGSKCHFAHG 249 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MDFIGEAVAG GNVLSGSDAV EMSGGFDNWG IPGSMDQGVW ATEDDYNAWN PGSSLETPPN 60 KRSRNSQGGD AHVIVPTRSK AIGKMFFKTK LCCKFRAGVC PYITNCNFAH GIEELRKPPP 120 NWQEIIAAHE SELGGGVVVE PPREEHQIPT MSSPDLRGET QRSYKGRHCK KFYTEEGCPY 180 GDSCAFLHDE QSRARESVAI SVTPSAGPGF GNSATVANQK PSNWKTRICN KWETTGYCPF 240 GSKCHFAHGA EELHKFGGGL AEGEGKDSAP TPSNINQGGA TENTAAVSTI SAPHGDVYHL 300 GSGVPIQRSS CSMRTGERPI QKWKGPDKIS KIYGDWIDDI E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-119 | C3H family protein |