PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184155.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 723aa MW: 82203 Da PI: 8.5951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.6e-20	36	134	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y +YA+++GF+vr s+ k+ r+ge+++r +vCs++g+r+ + +++err+r ++r++C a++ kk+ +g++ vt +++eH+ XP_019184155.1 36 CYTNYARTIGFDVRCSSVKHD-RDGEVYSRYLVCSRQGFRAGGRIPrdhdrgvnvgDKRERRRRLSNRVNCGARIGFKKKGSGEYIVTVFVEEHT 129 7*************99987.9999*********997665567789*9********************************** PP FAR1 87 Helap 91 H+l++ XP_019184155.1 130 HKLCS 134 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MELPPPDDHN LNPAMDALEL PAVGRVFRTL NEGIQCYTNY ARTIGFDVRC SSVKHDRDGE 60 VYSRYLVCSR QGFRAGGRIP RDHDRGVNVG DKRERRRRLS NRVNCGARIG FKKKGSGEYI 120 VTVFVEEHTH KLCSDSSKVF MRINRRLNVV HQAFLGNCVK ANIGSSTGLR FCKEATGSYA 180 NVGATDVEFH NFKRDVQTYV DVADGEMIIA TFKAKQEMCS EFFYEYHMDE ENRLSRLFWA 240 DPLSRRTFSC YGDNISFDAT YGTNRYSMVF VPFMGVDNHK RCITFGGGLL TKEDVDSYSW 300 LLEKFIAAMG KSPLCVVTDQ DPAMRIAIQQ VLRNCRHRYC MWHIMTKVNE KLGNELAKDN 360 EFRKKLNAIV WNERICIDEF EAQWHLLIDE YKLTNHRWFC KIFGERENWI PAYFSDLPMS 420 GLLRTTSRSE AENGVYGKFT RPHSSLVEFY MQFESALGTQ RYRQDKLNAE YEGYLPKFKT 480 PLALERTIAR EFTITIFYEL QKEIEAACFY CSVIGVRQDG DSTHYDIANE GNIIATVYYK 540 VGGLGASCSC NLFRRMGLVC RHMFVVFWGA QMEQLPAEYI VSRWCKHLTC GACKGVPSNG 600 DKPTPVATQL WTEINTCVGL VGNSLEPQTR MVSILKDLTA EFSSDGLSTN PVKGNRAAIQ 660 ALCGVEPPES IIIKPPAQAK NKGTGKRIKS QREIAIEKNA KIGRKCGICG KYAHHNARSC 720 PSK

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MELPPPDDHN LNPAMDALEL PAVGRVFRTL NEGIQCYTNY ARTIGFDVRC SSVKHDRDGE  60
VYSRYLVCSR QGFRAGGRIP RDHDRGVNVG DKRERRRRLS NRVNCGARIG FKKKGSGEYI  120
VTVFVEEHTH KLCSDSSKVF MRINRRLNVV HQAFLGNCVK ANIGSSTGLR FCKEATGSYA  180
NVGATDVEFH NFKRDVQTYV DVADGEMIIA TFKAKQEMCS EFFYEYHMDE ENRLSRLFWA  240
DPLSRRTFSC YGDNISFDAT YGTNRYSMVF VPFMGVDNHK RCITFGGGLL TKEDVDSYSW  300
LLEKFIAAMG KSPLCVVTDQ DPAMRIAIQQ VLRNCRHRYC MWHIMTKVNE KLGNELAKDN  360
EFRKKLNAIV WNERICIDEF EAQWHLLIDE YKLTNHRWFC KIFGERENWI PAYFSDLPMS  420
GLLRTTSRSE AENGVYGKFT RPHSSLVEFY MQFESALGTQ RYRQDKLNAE YEGYLPKFKT  480
PLALERTIAR EFTITIFYEL QKEIEAACFY CSVIGVRQDG DSTHYDIANE GNIIATVYYK  540
VGGLGASCSC NLFRRMGLVC RHMFVVFWGA QMEQLPAEYI VSRWCKHLTC GACKGVPSNG  600
DKPTPVATQL WTEINTCVGL VGNSLEPQTR MVSILKDLTA EFSSDGLSTN PVKGNRAAIQ  660
ALCGVEPPES IIIKPPAQAK NKGTGKRIKS QREIAIEKNA KIGRKCGICG KYAHHNARSC  720
PSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-85	FAR1 family protein