PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184038.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 332aa    MW: 37075.6 Da    PI: 6.8799
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-114390154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f t+eeAa+a++ a+ +l+
  XP_019184038.1 43 SRFKGVV-GQQSGNWGAQIYA------NhQRVWLGTFKTEEEAAAAYDSAAIRLR 90
                    6899996.5668******999......44**********************9986 PP
2B384.31.1e-26164256184
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a ++           gg    +++l+++d+  r W+++++y+k+s+++v+t+GW++Fvk++g+k +D+v+F+ 
  XP_019184038.1 164 FKKELTPSDVGKLNRLVIPKKHALKFfprtldtaevtGGA--DDVELVFYDKAMRAWKFRYCYWKSSQSFVFTRGWNRFVKDKGIKPRDVVIFSA 256
                     89***************************99988876433..7899***********************************************93 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MMASGTTNVT TVEASDSDSS NEQHRRQKRQ RPEPDAAVNV GSSRFKGVVG QQSGNWGAQI  60
YANHQRVWLG TFKTEEEAAA AYDSAAIRLR CGDAHRNFPW TSITLQEPSF QAKFSTGEIL  120
KMIKDGSYVP KFSDHCKHLA LSGQPVGISP QPGDEPGSVL TELFKKELTP SDVGKLNRLV  180
IPKKHALKFF PRTLDTAEVT GGADDVELVF YDKAMRAWKF RYCYWKSSQS FVFTRGWNRF  240
VKDKGIKPRD VVIFSAYEYK DNNNNNGPET RSICVIDVEY TDHINSNNGV EIKTEEGSVD  300
KGDEEGREGI EMEMGNMAVK PAGFLLFGVQ II
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-87RAV family protein