PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183695.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 524aa MW: 57519 Da PI: 6.2956

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	168	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019183695.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217 78*****************......55**********************997 PP
2	AP2	43.7	6.7e-14	260	310	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_019183695.1 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 310 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MERSGEMWDL NDSPDQRGDD ESEDGCSSPV DGDDEKGKRV GSVSNSSSSA VVVEDASEEE 60 DDDGGGKSKK NKAAAGKIFG FSVAAGPNDD NCSSPVTRQF FPVDDSEMFA GGGDGDGSIY 120 LPRAHWVGVK FCQSEPHAGS AAAEKPTATE VSQQPMKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE DDLKQMSNLT 240 KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA 300 YDKAAIKCNG KDAVTNFDPS IYENELSSAT ETCENAADHN LDLSLGSSSS KQGEENVGHN 360 SSAMQFEMDW RQPAVVSNKQ AIPGERRREG YNEAEAMQLL SRTHLHSPAS NDQIHSTYGH 420 FVKPGGESHM LQMFSPHLSS PSYQFPSSSN SGGRIGWGGI GDLSLSTTTS SNHIPQWHPS 480 NPPPPQLFAT TAAASSGFPQ QTLRPQNWPH HKNNGFHYSF MRPP

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MERSGEMWDL NDSPDQRGDD ESEDGCSSPV DGDDEKGKRV GSVSNSSSSA VVVEDASEEE  60
DDDGGGKSKK NKAAAGKIFG FSVAAGPNDD NCSSPVTRQF FPVDDSEMFA GGGDGDGSIY  120
LPRAHWVGVK FCQSEPHAGS AAAEKPTATE VSQQPMKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE DDLKQMSNLT  240
KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA  300
YDKAAIKCNG KDAVTNFDPS IYENELSSAT ETCENAADHN LDLSLGSSSS KQGEENVGHN  360
SSAMQFEMDW RQPAVVSNKQ AIPGERRREG YNEAEAMQLL SRTHLHSPAS NDQIHSTYGH  420
FVKPGGESHM LQMFSPHLSS PSYQFPSSSN SGGRIGWGGI GDLSLSTTTS SNHIPQWHPS  480
NPPPPQLFAT TAAASSGFPQ QTLRPQNWPH HKNNGFHYSF MRPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-122	AP2 family protein