PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183400.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 545aa    MW: 60807.9 Da    PI: 7.4939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.25.3e-1231765442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+a+ ++++   ++l+++ +  +s +gdp+qRl ay+ e+L a+   s+ + y+ l+ +e +    ++ l+++++++e++P+lkf+++
  XP_019183400.1 176 KQLLIACARALLAENKDHFDRLVEEARVSVSITGDPIQRLGAYMIEGLVAKKEASGANFYRGLKGKEPA---GKDLLSYMHILYELCPYLKFGYM 267
                     799*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI +a  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l ++g++La + e++ +p+ef++ v     ++
  XP_019183400.1 268 AANGAIADACRNEDRIHIIDFQIGQGTQWMTLLQALAARPSGAPRVRITGIDDPVSQyaRGDGLAAVGKQLAAISEKFSIPVEFHA-VPVFAPKV 361
                     ******************************************************999999**************************.6888999* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L+++pgE+laVn+ +qlh+++des +++++rd +L++vkslsPkvv++veqe+++n+++F+ rfle+l+yysa+f+s++++l+r+++eri+
  XP_019183400.1 362 TRDMLDIRPGESLAVNFPFQLHHTPDESIDMNNPRDGLLRFVKSLSPKVVTLVEQESNTNTAPFFPRFLETLDYYSAIFESIDVTLARDKKERIN 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivnv+aceg+er+ rhe l+kW++r+++aGF+++pls+++++ +k+ll+ ++ + y++ e++g+++lgWk+r+L+s+ aW
  XP_019183400.1 457 VEQHCLARDIVNVIACEGQERVVRHELLGKWKSRFTMAGFREYPLSSYVNSVIKSLLKYYS-EHYTLVEKDGAMLLGWKQRNLISALAW 544
                     *********************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MDSHQFFGYG INGADFAYSS YPDIASIPTR HIGSLKFDSR TSPNSPFATH FDPQTPTSLS  60
DSQEQQSSTD NLSGISASSN SLLDYSSYLQ ESLLIPSGST SFHRNQKGKH VLWQHQEPLG  120
QKSRSWSQEG QISGLIEFQP SRVSSIGKPD GSVHSLKRYK TVQDFPLQGV PQGNIKQLLI  180
ACARALLAEN KDHFDRLVEE ARVSVSITGD PIQRLGAYMI EGLVAKKEAS GANFYRGLKG  240
KEPAGKDLLS YMHILYELCP YLKFGYMAAN GAIADACRNE DRIHIIDFQI GQGTQWMTLL  300
QALAARPSGA PRVRITGIDD PVSQYARGDG LAAVGKQLAA ISEKFSIPVE FHAVPVFAPK  360
VTRDMLDIRP GESLAVNFPF QLHHTPDESI DMNNPRDGLL RFVKSLSPKV VTLVEQESNT  420
NTAPFFPRFL ETLDYYSAIF ESIDVTLARD KKERINVEQH CLARDIVNVI ACEGQERVVR  480
HELLGKWKSR FTMAGFREYP LSSYVNSVIK SLLKYYSEHY TLVEKDGAML LGWKQRNLIS  540
ALAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-174GRAS family protein