PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183097.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 442aa    MW: 49519.4 Da    PI: 7.0921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.16.2e-120604411373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk.alppsetsekn.........sseelaalklfs 85 
                     +++lL++cAe +s +d+++a++l++ l  + sp gd+ +Rla+ f +AL+ rl+rs s  ++ +++p + +  +            + +++  ++
  XP_019183097.1  60 MRQLLISCAELISRSDFSAAHRLISFLASNTSPIGDSSERLAHQFIRALSLRLHRSISAAAAsSVAPLPIPFPElqiasveppAGLVQSSYLSLN 154
                     589****************************************************66655440444443332222344333322222233355** PP

            GRAS  86 evsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     +v+P+++f+hltaNqaIlea++    +++Hi+D+d+++G+QWp+L+qaLa+R  +pp+lRiT  g+    + + l++tg+rLakfA++lg++f+f
  XP_019183097.1 155 QVTPFIRFTHLTANQAILEAIDDGqrHAIHILDLDVMHGVQWPPLMQALADR-YPPPTLRITSTGN----DLDILRRTGDRLAKFAHSLGLRFQF 244
                     *********************97756889**********************9.999**********....9************************ PP

            GRAS 179 nvlvakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     ++l++++ ed       l++  + p+E+laVn+vl lhrll+++ +l+     +L+ +k +sPkvv+v+e+ea+hn++ Fl+rf+eal++y ++f
  XP_019183097.1 245 HPLLVSNNEDDeddgpPLSSVVLLPDETLAVNCVLYLHRLLKNREKLTL----FLHRIKAMSPKVVTVAEREANHNHPFFLQRFVEALDHYGVVF 335
                     ***7765555534344466777778****************66666666....****************************************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                     +slea+lp+ s+er+ vE++++greiv++va+eg++r+erhe++++W+  l+++GF++v ls +a +qaklllr ++ s+gy++    +s++lgW
  XP_019183097.1 336 ESLEATLPPSSRERVAVEQVWFGREIVDIVAAEGEKRKERHEKFRTWEVLLRSSGFSNVGLSPFALSQAKLLLRLHYpSEGYQLRVIADSFFLGW 430
                     *********************************************************************************************** PP

            GRAS 363 kdrpLvsvSaW 373
                     +++pL+svS+W
  XP_019183097.1 431 QNHPLFSVSSW 441
                     *********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MLGSFGSSSS SRSHDEQDDN INEPPSSVVA PLPPPFQFHQ IQRRRTVFAS SSSSPPAIQM  60
RQLLISCAEL ISRSDFSAAH RLISFLASNT SPIGDSSERL AHQFIRALSL RLHRSISAAA  120
ASSVAPLPIP FPELQIASVE PPAGLVQSSY LSLNQVTPFI RFTHLTANQA ILEAIDDGQR  180
HAIHILDLDV MHGVQWPPLM QALADRYPPP TLRITSTGND LDILRRTGDR LAKFAHSLGL  240
RFQFHPLLVS NNEDDEDDGP PLSSVVLLPD ETLAVNCVLY LHRLLKNREK LTLFLHRIKA  300
MSPKVVTVAE REANHNHPFF LQRFVEALDH YGVVFESLEA TLPPSSRERV AVEQVWFGRE  360
IVDIVAAEGE KRKERHEKFR TWEVLLRSSG FSNVGLSPFA LSQAKLLLRL HYPSEGYQLR  420
VIADSFFLGW QNHPLFSVSS WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-117GRAS family protein