PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019183047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 374aa MW: 41708.9 Da PI: 7.4687 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 5.9e-12 | 48 | 72 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f++rtG Ck+G +CkF+H++ XP_019183047.1 48 VPDCAFYLRTGACKFGINCKFNHPM 72 689********************95 PP | |||||||
2 | zf-CCCH | 33.3 | 8.5e-11 | 95 | 117 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++ G CkyG++C+++H++ XP_019183047.1 95 VCKFYLEAGGCKYGESCRYMHSK 117 5********************95 PP | |||||||
3 | zf-CCCH | 27 | 7.8e-09 | 135 | 158 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++ +GtC yG+ C F+H+ XP_019183047.1 135 EKECPFYMSNGTCGYGAHCVFHHP 158 689********************8 PP | |||||||
4 | zf-CCCH | 24.4 | 5.2e-08 | 282 | 307 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +f++tG Ck+ + C+F+H+ XP_019183047.1 282 PGQPECAYFMKTGGCKFKSLCRFHHP 307 5789*********************8 PP | |||||||
5 | zf-CCCH | 34 | 4.9e-11 | 324 | 349 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++Cr+++r+GtCk+G+ C F+H+ XP_019183047.1 324 PGQPICRNYQRFGTCKFGSGCLFNHP 349 5789*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence |
MDMRRRGFTS SEEEEEEEET LALAENFASI ALNSGQRSTF GLPLRPNVPD CAFYLRTGAC 60 KFGINCKFNH PMRMPGQVVE ENYRDGSLKK SPQIVCKFYL EAGGCKYGES CRYMHSKGES 120 KLQFNFLGLP IRLGEKECPF YMSNGTCGYG AHCVFHHPNP TPMGGLNTSS TLNDESVGQS 180 HCSFGNLDAG ESLHFSGTSQ LGLTSWPPDA LHMSSDKTLS FPSFSSSHIS SHSERKNYLG 240 PSYLYQRYGL SQSTQVSNAS VKRIESFEHT KAMQSEEFPE RPGQPECAYF MKTGGCKFKS 300 LCRFHHPAQK PDILLNDKGL PLRPGQPICR NYQRFGTCKF GSGCLFNHPV DHGEWISPPW 360 QETFTPPPSL SPSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-76 | C3H family protein |