PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183030.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 355aa MW: 39134.6 Da PI: 7.6341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.9	2.2e-07	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_019183030.1 144 FCEICGKGFKRDANLRMHMRAH 165 6*******************99 PP
2	zf-C2H2	13.6	0.00019	231	254	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + XP_019183030.1 231 YSCNRCNkKSFSVMADLKSHMKHC 254 99*******************987 PP
3	zf-C2H2	11.2	0.0011	263	278	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 C +sFsrk+ L +Hi XP_019183030.1 263 CRTSFSRKDKLFSHIA 278 99************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MSFFGDLRHT PAATKPPGIV TASGGADPRV PLLNLSAVRE RVDSLHKFLC DSVNSNTLLG 60 KHETDRVSAE ITAAIHQIIV NGVALLATTQ AADGTDSKCS NQTSPSKLLC SETGLLAPKE 120 RAGGEDSEII ELDAVELLAE HIHFCEICGK GFKRDANLRM HMRAHGNQFK TPEALAKPPE 180 KCSETIPGRP ALFSCPFPGC SRNKSHNKFR PLKSAICVKN HFKRSHCPKM YSCNRCNKKS 240 FSVMADLKSH MKHCGISKWK CSCRTSFSRK DKLFSHIALF EGHMPTVEEA ADMAAPPARE 300 VEEGIANKDT EMAENSQTDN SLLDRLLDDF NSIENFCFQD PLFSASPMMD NFFSF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MSFFGDLRHT PAATKPPGIV TASGGADPRV PLLNLSAVRE RVDSLHKFLC DSVNSNTLLG  60
KHETDRVSAE ITAAIHQIIV NGVALLATTQ AADGTDSKCS NQTSPSKLLC SETGLLAPKE  120
RAGGEDSEII ELDAVELLAE HIHFCEICGK GFKRDANLRM HMRAHGNQFK TPEALAKPPE  180
KCSETIPGRP ALFSCPFPGC SRNKSHNKFR PLKSAICVKN HFKRSHCPKM YSCNRCNKKS  240
FSVMADLKSH MKHCGISKWK CSCRTSFSRK DKLFSHIALF EGHMPTVEEA ADMAAPPARE  300
VEEGIANKDT EMAENSQTDN SLLDRLLDDF NSIENFCFQD PLFSASPMMD NFFSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-73	C2H2 family protein