PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182935.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 300aa    MW: 33753.9 Da    PI: 7.5529
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.27.5e-991130027301
       GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsep 117
                       m+++aerda+irern+al e+k a+aerdma lqrd+a+ae n+a+ erd+++ al l+e s++      +++g +++s++k+i+  qq  ++
  XP_019182935.1  11 AYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAAIAECNAAIQERDEAISALHLQESSMNehnfVPESPGNRIVSEAKHIHYQQQ-MHH 104
                     469**********************************************************99999665444567899*********7777.566 PP

       GAGA_bind 118 qledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.er............skaekksidlvln 199
                      ++ +a++  e+  ++   + + ++e+ + +++++++++k   +k+ ++ k++ e+ +++v + s+d ++            +++++ + +l+ln
  XP_019182935.1 105 MIDSTAYDPAETLAIDPARVADLTNENAKPRRVRQTKESKPMSAKRPRAGKRTAESLNRQVISTSDDcSNgndldndeernkQHETW-KENLGLN 198
                     677888887778888888888888888888877777777766677777777777777777777777644488899999887444444.569**** PP

       GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                     ++++Des++PvPvCsCtG+++ CYkWG+GGWqSaCCtt+iS+yPLP ++++r +R++grKmS+gaf+klL++LaaeGydls p+DLkdhWAkHGt
  XP_019182935.1 199 QINFDESAMPVPVCSCTGTPQPCYKWGSGGWQSACCTTSISMYPLPLVSNKRYSRVGGRKMSGGAFSKLLNRLAAEGYDLSVPLDLKDHWAKHGT 293
                     *********************************************************************************************** PP

       GAGA_bind 295 nkfvtir 301
                     n++ ti+
  XP_019182935.1 294 NRYSTIK 300
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MMDHNNLTIK AYMAIMAERD AAIRERNMAL EERKRAFAER DMAMLQRDAA IAECNAAIQE  60
RDEAISALHL QESSMNEHNF VPESPGNRIV SEAKHIHYQQ QMHHMIDSTA YDPAETLAID  120
PARVADLTNE NAKPRRVRQT KESKPMSAKR PRAGKRTAES LNRQVISTSD DCSNGNDLDN  180
DEERNKQHET WKENLGLNQI NFDESAMPVP VCSCTGTPQP CYKWGSGGWQ SACCTTSISM  240
YPLPLVSNKR YSRVGGRKMS GGAFSKLLNR LAAEGYDLSV PLDLKDHWAK HGTNRYSTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-85BBR-BPC family protein