PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182934.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 444aa MW: 49087.7 Da PI: 5.8368

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.4e-17	161	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019182934.1 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210 78*****************......55**********************997 PP
2	AP2	43	1.1e-13	253	303	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a++ a+ k +g XP_019182934.1 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDTAAIKCNG 303 89******.7**5553..2.26******99********98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MWDLNDSPDQ RRDEESDEGC CSPMDGDDEK GKGVGSVSNS SSSAALVVED VSSEDEEDRR 60 KRGGGGGNKI FGFPVVGRSD DNWSSESEPP PVTRQFFPVD ESEMGATSGD GSPSFPRAAH 120 WVGVKFCQSD PLNGAAAAGK PLEVSQQPMK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLE DYEEDLKQMS NLTKEEFVHV 240 LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA ARAYDTAAIK 300 CNGKDAVTNF EPSIYEDEQI NSTENSGNAA DHSLDLSLGS SSSKQGGGGR EMVGEHRAQN 360 SSLLQFELNW WHQGGLRPPK EHGGSDDGRR REGYNETETL QQLSQTHLNS PGSRKANNNT 420 GSSSEMLRFG HFMTPPQMFP PQFS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MWDLNDSPDQ RRDEESDEGC CSPMDGDDEK GKGVGSVSNS SSSAALVVED VSSEDEEDRR  60
KRGGGGGNKI FGFPVVGRSD DNWSSESEPP PVTRQFFPVD ESEMGATSGD GSPSFPRAAH  120
WVGVKFCQSD PLNGAAAAGK PLEVSQQPMK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLE DYEEDLKQMS NLTKEEFVHV  240
LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA ARAYDTAAIK  300
CNGKDAVTNF EPSIYEDEQI NSTENSGNAA DHSLDLSLGS SSSKQGGGGR EMVGEHRAQN  360
SSLLQFELNW WHQGGLRPPK EHGGSDDGRR REGYNETETL QQLSQTHLNS PGSRKANNNT  420
GSSSEMLRFG HFMTPPQMFP PQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-115	AP2 family protein