PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019182608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 282aa MW: 31667.4 Da PI: 6.8314 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.2 | 2.8e-43 | 7 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l++++reda++sl+yeAe+r+rdPvyG+vg+i+ lqq+l+q++++l XP_019182608.1 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELHTSQREDAVNSLAYEAECRLRDPVYGCVGLISILQQKLKQVQHDLL 101 7*******************************************************************************************998 PP DUF260 96 llke 99 + k+ XP_019182608.1 102 SSKR 105 7766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
MSSSSTPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELHTSQR 60 EDAVNSLAYE AECRLRDPVY GCVGLISILQ QKLKQVQHDL LSSKRELANY IGPAAMQPLV 120 QHPAFLQHPN NPSNYLMGLP TVVPHAAQLI AHDSLQQQQQ QQQPFIEPYH QLGGGVVRTY 180 DQQQQQQQQQ HELMTFNSGF ESGGPVNGAR IFHQMSSAAS MPPPYDTPYG MQQPGQEHFD 240 PNHDQIQLQS QPPMQQQQQQ QPPPQHQERS KSEEGRSVDP SC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-68 | LBD family protein |