PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182606.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 268aa    MW: 30372.7 Da    PI: 6.3657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll ++++++G g W++++ + g++R++k+c++rw++yl
   XP_019182606.1 15 KGAWTEQEDNLLRKCIHKYGEGKWHLVPVRAGLNRCRKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding33.21.2e-1068115146
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      rg +  +E +l+ +++k+lG+    +W++Ia +++ gRt++++k+ w++
   XP_019182606.1  68 RGDFNLDEIDLIMRLHKLLGNSfvcRWSLIAGRIP-GRTANDVKNLWNT 115
                      788999***************9*************.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MADSSSEPPS GVMKKGAWTE QEDNLLRKCI HKYGEGKWHL VPVRAGLNRC RKSCRLRWLN  60
YLRPDIKRGD FNLDEIDLIM RLHKLLGNSF VCRWSLIAGR IPGRTANDVK NLWNTRLQKK  120
TIATPSSGQE KWKDKAPKTT EKTVVIRPQP RRFVVTSSSR TLPMTGKTTI VTSEEVVQLQ  180
GHNMPPPPPP PPEAAESTSV PRLMENVDPN NSIIDPPEEA ETSDNLAPWL DDFLLDMEFD  240
GDGMTCMQEG QIEWCDFHID SDLLDLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-57MYB family protein