PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182591.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 339aa    MW: 38218.8 Da    PI: 8.2653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.8e-15264288226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG+C+yG++C+FaHg
  XP_019182591.1 264 KTELCNKWQETGECPYGENCQFAHG 288
                     9***********************8 PP

2zf-CCCH19.61.6e-06301326126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++  C+yG rC+F H+
  XP_019182591.1 301 YKTEVCRMVLAGDNCPYGHRCHFRHS 326
                     9**********55**********997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MLKESSSFDG VRASSISRSA VGPNNFSGGS SSPHYNCNPF LSPSSPRQLD LTDYSTNYYS  60
SLFVHNCKSP SDTSFDDAEA MATERRLFHA SFVLEYQQLY NRYTLCLAHL QESLKEVNAL  120
RQENESIRLA NADLVQRLSL LSQATIQNCL LSDFSHLGIG VRASPIRDTL TTESKPPNVR  180
PPPGAIEQHR LERRNQEQVP IPKSISVRSS GYLKMKAQDG SAGGQSSHRL NTQPLGRSQR  240
VYVPGVKRDE EALEFDVYNQ GMLKTELCNK WQETGECPYG ENCQFAHGIK ELRPVIRHPR  300
YKTEVCRMVL AGDNCPYGHR CHFRHSITDQ DRPSSNHLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-71C3H family protein