PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182590.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 340aa MW: 38346.9 Da PI: 8.2653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.5	2.8e-15	265	289	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG+C+yG++C+FaHg XP_019182590.1 265 KTELCNKWQETGECPYGENCQFAHG 289 9***********************8 PP
2	zf-CCCH	19.6	1.6e-06	302	327	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ XP_019182590.1 302 YKTEVCRMVLAGDNCPYGHRCHFRHS 327 9********55********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MLKESSSFDG VRASSISRSA VGPNNFSGGS SSPHYNCNPF LSPSSPRQLD LTDYSTNYYS 60 SLFVHNCKSP SDTSFDDAEA MATERRLFHA SFVLEYQQLY NRYTLCLAHL QESLKEVNAL 120 RQENESIRLA NADLVQRLSL LSQATIQNCL LSDFSHLGIG VRASPIRDTL TTESKPPNVR 180 PPPGAIEQHR LERRNQEQVP IPKSISVRSS GYLKMKAQDG SAGGQSSHRL NTQPLGRSQQ 240 RVYVPGVKRD EEALEFDVYN QGMLKTELCN KWQETGECPY GENCQFAHGI KELRPVIRHP 300 RYKTEVCRMV LAGDNCPYGH RCHFRHSITD QDRPSSNHLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-71	C3H family protein