PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182377.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-PHD

Protein Properties

Length: 720aa MW: 81852.1 Da PI: 9.0587

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.6e-10	493	537	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L +F++n ps+e + L+k+lgL+ ++V WF+N R+ XP_019182377.1 493 PNAVEKLRLVFAENELPSKEVKDNLSKQLGLDSEKVNKWFKNARY 537 678999*************************************97 PP
2	PHD	36.7	9.4e-13	220	273	1	49
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHH CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCk 49 +C+ C+ d+ +++++lCd +C+ +fH+kCl+++l++e++p + w+C+ Ck XP_019182377.1 220 ICAKCKLRDAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKLCK 273 599999844455******56***************99999*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MPGTVKRETH KNVEKLIQIK NGTKKSLKKR PKVNPKHQKT SSCLSKKMVI ENPCEGKGKG 60 SSIGKTLQKA IFSKTKSPEK QSALTCKVRK LQKVDSKKNG ENEEADIEYD RLKKRKRAKR 120 RKRNAELDEV SRLHRRTRYL LIKMKLEQNL IDAYSTEGWK GQSREKIKPE KELERAKLQI 180 LKCKLGIREA VRQLDLLSSV GHIDDEVIAP DGSVHHEHII CAKCKLRDAF PDNDIILCDG 240 TCNCAFHQKC LDPPLSTENI PPDDEGWFCK LCKIRMEIIE STNVHLGTHF AVDSNWEDIF 300 KEEAALPGGG DSLQCPEHEW PSDDSEDDDY DPEKIENSSS KSTSNRESDD SDDASSSTSL 360 GSLEDELFAF TGRPEKSIGF ENNSADIIAM LDSDQTTDFD VLNGPRQRTS VDYIKLNDEL 420 FGKNPPMNEQ NSEDEDWGPT KRKQKKKEFE SDAASTLMTL CENENDCQEK QSTEVEEKSY 480 SGKTRRSIFR IPPNAVEKLR LVFAENELPS KEVKDNLSKQ LGLDSEKVNK WFKNARYLAL 540 KGRKKVEKTN PSKAVSPIAS EECAADTVKG KITEEVTAKD MATERAVQTP KNLKRTHRRK 600 SAHKLICKSK KIQLRKAVRQ SIGSNKAIVE FGDDMSLKLL RERVKKEKRR LCFNGKGGGE 660 LEAEAEMERL CRIKNKVERL QLVLLRLRDA RYNKMVESPT PNSPFMYVPV AEIKEKTQVS

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MPGTVKRETH KNVEKLIQIK NGTKKSLKKR PKVNPKHQKT SSCLSKKMVI ENPCEGKGKG  60
SSIGKTLQKA IFSKTKSPEK QSALTCKVRK LQKVDSKKNG ENEEADIEYD RLKKRKRAKR  120
RKRNAELDEV SRLHRRTRYL LIKMKLEQNL IDAYSTEGWK GQSREKIKPE KELERAKLQI  180
LKCKLGIREA VRQLDLLSSV GHIDDEVIAP DGSVHHEHII CAKCKLRDAF PDNDIILCDG  240
TCNCAFHQKC LDPPLSTENI PPDDEGWFCK LCKIRMEIIE STNVHLGTHF AVDSNWEDIF  300
KEEAALPGGG DSLQCPEHEW PSDDSEDDDY DPEKIENSSS KSTSNRESDD SDDASSSTSL  360
GSLEDELFAF TGRPEKSIGF ENNSADIIAM LDSDQTTDFD VLNGPRQRTS VDYIKLNDEL  420
FGKNPPMNEQ NSEDEDWGPT KRKQKKKEFE SDAASTLMTL CENENDCQEK QSTEVEEKSY  480
SGKTRRSIFR IPPNAVEKLR LVFAENELPS KEVKDNLSKQ LGLDSEKVNK WFKNARYLAL  540
KGRKKVEKTN PSKAVSPIAS EECAADTVKG KITEEVTAKD MATERAVQTP KNLKRTHRRK  600
SAHKLICKSK KIQLRKAVRQ SIGSNKAIVE FGDDMSLKLL RERVKKEKRR LCFNGKGGGE  660
LEAEAEMERL CRIKNKVERL QLVLLRLRDA RYNKMVESPT PNSPFMYVPV AEIKEKTQVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	DRLKKR
2	113	120	KKRKRAKR
3	119	145	KRRKRNAELDEVSRLHRRTRYLLIKMK
4	644	651	VKKEKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	3e-97	HB-PHD family protein