PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182368.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 454aa MW: 50346.4 Da PI: 9.6416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	229	251	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+++ H XP_019182368.1 229 SCPVCGEIFMKPENLELHQSVrH 251 6******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAKTKTKTSQ KHPKENNLKT PKPQSHCEGK DNVQKPHSWA VVRSLFTCKH LQAQIEQQQK 60 QKQEEQVQPE QPKVQSEKQN VQPKTSKLDP HHHHQPIEES SKKCKKLKCS GSICSNTKVM 120 HRPELSSSSS PEEHNKRKSP FSSCKNLNGS TRSMKVTLND LNNGGATTAT ANNSSSSSSL 180 SAPTSSPSIV GSFRAMPFRK LSGCYECRMV VDPVLGMTRD PSLRTTISSC PVCGEIFMKP 240 ENLELHQSVR HAVSELGPED TSRNIVEIIF QSSWLKKDTP ICKIDRILKV HNTPRTISRF 300 EDYREATKAK ANKLAKKHPR CIADGNELLR FHCTTFVCSL GVNASSNLCN SIPNCNVCAV 360 IKNGFKVAED VAGKGILTTA TSGRAHDSAR VADEKRAMLV CRVIAGRVKK NMEGSLEEYD 420 SVAGAAGVYS NLDELYVFNH RAILPCFVVI YREF

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAKTKTKTSQ KHPKENNLKT PKPQSHCEGK DNVQKPHSWA VVRSLFTCKH LQAQIEQQQK  60
QKQEEQVQPE QPKVQSEKQN VQPKTSKLDP HHHHQPIEES SKKCKKLKCS GSICSNTKVM  120
HRPELSSSSS PEEHNKRKSP FSSCKNLNGS TRSMKVTLND LNNGGATTAT ANNSSSSSSL  180
SAPTSSPSIV GSFRAMPFRK LSGCYECRMV VDPVLGMTRD PSLRTTISSC PVCGEIFMKP  240
ENLELHQSVR HAVSELGPED TSRNIVEIIF QSSWLKKDTP ICKIDRILKV HNTPRTISRF  300
EDYREATKAK ANKLAKKHPR CIADGNELLR FHCTTFVCSL GVNASSNLCN SIPNCNVCAV  360
IKNGFKVAED VAGKGILTTA TSGRAHDSAR VADEKRAMLV CRVIAGRVKK NMEGSLEEYD  420
SVAGAAGVYS NLDELYVFNH RAILPCFVVI YREF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-100	C2H2 family protein