PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181996.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 409aa MW: 45612.8 Da PI: 8.818

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	104	201	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+++GFsvr+ + k+ r+g++t+r + C++eg + +++ +++rr+r+++r++C+a++ ++k+k + + v+ ++ eH+ XP_019181996.1 104 FYMTYARTCGFSVRQGTLKRG-RDGKVTTRYLLCNREGVKGGGRSTpkpveggsggPSTQRRRRVSNRVNCNARICITKDKGAGFIVSIFVPEHT 197 9**************9998.8888*********9998888999**999999****************************** PP FAR1 87 Hela 90 H ++ XP_019181996.1 198 HRMC 201 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MESTAPQTTG DYGMPPLQPP PGNPPVVRFA RGTMESTAPE TTGDYGMPPL QLPPGNPPAD 60 WSQESVGTGG YISIPVKYWW PTVDSAITPA VGYRFNTIAE GVHFYMTYAR TCGFSVRQGT 120 LKRGRDGKVT TRYLLCNREG VKGGGRSTPK PVEGGSGGPS TQRRRRVSNR VNCNARICIT 180 KDKGAGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKVN VGGSKGFRLY 240 KESVGSFANV GATETEFHNF KRDLQSYVAD KDGEMIIAMF NQKHDVCENF FFDYYLDEGN 300 HVARLFWADH TGRQNFLSFG DVISFDATYG TNRYSLVFIP FTGVDHHKRC ITFAGGLVTR 360 EDTDSYMWVL ERFKTAMGKS PLCVVTDEDP AMKSAIARVL PECRHRYCM

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MESTAPQTTG DYGMPPLQPP PGNPPVVRFA RGTMESTAPE TTGDYGMPPL QLPPGNPPAD  60
WSQESVGTGG YISIPVKYWW PTVDSAITPA VGYRFNTIAE GVHFYMTYAR TCGFSVRQGT  120
LKRGRDGKVT TRYLLCNREG VKGGGRSTPK PVEGGSGGPS TQRRRRVSNR VNCNARICIT  180
KDKGAGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKVN VGGSKGFRLY  240
KESVGSFANV GATETEFHNF KRDLQSYVAD KDGEMIIAMF NQKHDVCENF FFDYYLDEGN  300
HVARLFWADH TGRQNFLSFG DVISFDATYG TNRYSLVFIP FTGVDHHKRC ITFAGGLVTR  360
EDTDSYMWVL ERFKTAMGKS PLCVVTDEDP AMKSAIARVL PECRHRYCM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-36	FAR1 family protein