PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181986.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 627aa MW: 68000.9 Da PI: 6.4136

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.7	6e-29	151	204	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl XP_019181986.1 151 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 204 79*****************.******************************8 PP
2	Myb_DNA-binding	37.1	7.3e-12	153	203	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ g+t++++ s++qky+ XP_019181986.1 153 RVVWSIELHRKFVAAVNQLGIEkaVPKRILDLMNvDGLTRENVASHLQKYR 203 678***********************************************7 PP
3	Response_reg	54.8	5.2e-19	2	77	35	109
HHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 35 alellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 al++l++++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++++++ + + Ga d+l+Kp+ +eel++ XP_019181986.1 2 ALKMLRDNRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGITHGACDYLVKPVRIEELRN 77 67777666667*****************87754.558**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MALKMLRDNR DRFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANSD PKLVMKGITH 60 GACDYLVKPV RIEELRNIWQ HVIRRKKLEP KSQNKSGDQD RSPHGGGEGG QGAPLSGSTD 120 QNGKLNKKRK DEEDESDENG HENEDPSTQK KPRVVWSIEL HRKFVAAVNQ LGIEKAVPKR 180 ILDLMNVDGL TRENVASHLQ KYRLYLKRIS SVATQQANMV AAFGGKDSAY MRMGSLDGLG 240 DFRTLAGSGR FSHASLSSYT PGGMLGRLNS AAGVSIRNLT SPSLIQPSHG QNLGKPLGTL 300 GKLTPNVSQN ACLFQGIPSS LELDQFQQSD GIRDLNPLDD STLLGAANTF TDPGSGIGSS 360 SNPMMLHGNS QLAAGGIGNQ HSLNMASLNS EHFNIGVGGS SNFLDHGRAS DNWQNPIQVT 420 NFQSSSLPLT ETFNQGQMQQ NCARENNSSI APHLQGGCAG YSSLSSTATP FEDSRGEIQR 480 RERLVVGDAI PSINHQWGEL KQNPNSNGVY SNLTAQVPAS SIVPPLSQSM DLCNDTGNRR 540 MDASGQSNLG GSSVLLQHNK NEKLSTESRA RYYEDYLFEP PKPQGAFPSQ GYGSLDDLMS 600 SVIKREQDGA TLEGEFGFDA YSFGPCI

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MALKMLRDNR DRFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANSD PKLVMKGITH  60
GACDYLVKPV RIEELRNIWQ HVIRRKKLEP KSQNKSGDQD RSPHGGGEGG QGAPLSGSTD  120
QNGKLNKKRK DEEDESDENG HENEDPSTQK KPRVVWSIEL HRKFVAAVNQ LGIEKAVPKR  180
ILDLMNVDGL TRENVASHLQ KYRLYLKRIS SVATQQANMV AAFGGKDSAY MRMGSLDGLG  240
DFRTLAGSGR FSHASLSSYT PGGMLGRLNS AAGVSIRNLT SPSLIQPSHG QNLGKPLGTL  300
GKLTPNVSQN ACLFQGIPSS LELDQFQQSD GIRDLNPLDD STLLGAANTF TDPGSGIGSS  360
SNPMMLHGNS QLAAGGIGNQ HSLNMASLNS EHFNIGVGGS SNFLDHGRAS DNWQNPIQVT  420
NFQSSSLPLT ETFNQGQMQQ NCARENNSSI APHLQGGCAG YSSLSSTATP FEDSRGEIQR  480
RERLVVGDAI PSINHQWGEL KQNPNSNGVY SNLTAQVPAS SIVPPLSQSM DLCNDTGNRR  540
MDASGQSNLG GSSVLLQHNK NEKLSTESRA RYYEDYLFEP PKPQGAFPSQ GYGSLDDLMS  600
SVIKREQDGA TLEGEFGFDA YSFGPCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	6e-99	ARR-B family protein