PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181695.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 287aa MW: 29959.1 Da PI: 6.852

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_019181695.1 118 YQCKTCNRTFPSFQALGGHRASH 140 9***********99999998887 PP
2	zf-C2H2	13.7	0.00018	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019181695.1 188 HECSICGSEFSSGQALGGHMRRH 210 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MEISQEYSDY QMVLIKGKRT KRPRGLSPAD SSCSSGGGDG GAAAVFYSSS AQYSPATSTS 60 QISATTNDED EDMANCLILL ARGGGCRQVE RVSGSRKVDE MAAAAAGAGK GGGDLYVYQC 120 KTCNRTFPSF QALGGHRASH KKPKITAADD QKKSAAPSSS DFDKQSSPLF AAGVSTHTLS 180 NGGKAKIHEC SICGSEFSSG QALGGHMRRH RPPPTINPAK PLSVISDGGT ANVSESSDRR 240 EKAATGGGGV FTLDLNLPAP LEDDDDDQET KLQNLAFSTP ALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-55	C2H2 family protein