PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181186.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 615aa MW: 68487.9 Da PI: 4.3496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.3e-12	468	511	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++e+ e +++a++q+G++ ++ I + ++ gRt+ q+++++ k XP_019181186.1 468 RVRWSKEDTEVFYEAIRQFGSD-FSMIQQLFP-GRTRAQIRLKYKK 511 78******************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MDSLDDLFSD GAAKTSRAVG KFQPKAKGRP VKKGPVAAAT SSAPPSQSNQ LGGADKREGT 60 EVLKAGQLST KDGSSELIVP ENNRDLQCCL EKSVGESADL FPELESLDDF LPHDTNATET 120 TIPSSEEQLA ITTTSPVDDP TPVSNIPGAQ NSEVSAAQGP LTCGEPVVAT HEGVSQIDSI 180 DLEIEGIETY PCLETPDGPE LATISGRHTG KFQPKPKAHV FKESCDTGIP NSCAQESLST 240 DFVDKERLPA LSDDVLDLSS LGFDHAPPTE STPEVPVNEE MPNVDVNFPA EQPGSSGINA 300 DENIDAEFQV ENETQKKKGR KKAKKKAGGE EKPARKRKKA DKTEQATKEK PKKFSHTTRQ 360 KRRMVDKALL DTPEDEIDFQ RVRIKDLILL AEHKERLAKK EAALQNPQPQ VNPSNVDNSS 420 ELNNEEERFT FDEDENENGE AFEEQTTNEV EDSTVYFNYQ TYMEKTPRVR WSKEDTEVFY 480 EAIRQFGSDF SMIQQLFPGR TRAQIRLKYK KEERRHPSRV HDALTNRSKD HSRFEQVIAH 540 LRQIAAEEVQ NDDGIDESID LTGEEVEGQK EEPNSEHNEE AEVQDVEQDV TQVNSSVVEE 600 DEEDEDIWSQ YKSEF

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MDSLDDLFSD GAAKTSRAVG KFQPKAKGRP VKKGPVAAAT SSAPPSQSNQ LGGADKREGT  60
EVLKAGQLST KDGSSELIVP ENNRDLQCCL EKSVGESADL FPELESLDDF LPHDTNATET  120
TIPSSEEQLA ITTTSPVDDP TPVSNIPGAQ NSEVSAAQGP LTCGEPVVAT HEGVSQIDSI  180
DLEIEGIETY PCLETPDGPE LATISGRHTG KFQPKPKAHV FKESCDTGIP NSCAQESLST  240
DFVDKERLPA LSDDVLDLSS LGFDHAPPTE STPEVPVNEE MPNVDVNFPA EQPGSSGINA  300
DENIDAEFQV ENETQKKKGR KKAKKKAGGE EKPARKRKKA DKTEQATKEK PKKFSHTTRQ  360
KRRMVDKALL DTPEDEIDFQ RVRIKDLILL AEHKERLAKK EAALQNPQPQ VNPSNVDNSS  420
ELNNEEERFT FDEDENENGE AFEEQTTNEV EDSTVYFNYQ TYMEKTPRVR WSKEDTEVFY  480
EAIRQFGSDF SMIQQLFPGR TRAQIRLKYK KEERRHPSRV HDALTNRSKD HSRFEQVIAH  540
LRQIAAEEVQ NDDGIDESID LTGEEVEGQK EEPNSEHNEE AEVQDVEQDV TQVNSSVVEE  600
DEEDEDIWSQ YKSEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	338	KKKGRKKAKKKAGGEEKPARKRK
2	317	325	KKGRKKAKK
3	320	342	KKKGRKKAKKKAGGEEKPARKRK
4	320	338	RKKAKKKAGGEEKPARKRK
5	324	346	KKKGRKKAKKKAGGEEKPARKRK
6	334	340	ARKRKKA
7	335	339	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-44	MYB_related family protein