PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019181124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 489aa MW: 51230.6 Da PI: 7.9289 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.7 | 3.4e-12 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tG+C yG+rC+F+H++ XP_019181124.1 52 EADCMYYLKTGFCGYGARCRFNHPR 76 689********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_019181124.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP | |||||||
3 | zf-CCCH | 34.2 | 4.2e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H+p XP_019181124.1 143 GEKECSYYVKTGHCKFGVTCKFHHPP 168 7899********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.4e-12 | 316 | 340 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG+Ck+G++C+++H+p XP_019181124.1 316 LPECQHYMKTGECKFGSSCRYHHPP 340 689********************97 PP | |||||||
5 | zf-CCCH | 36.7 | 6.9e-12 | 362 | 386 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G+Ck+G++CkF H++ XP_019181124.1 362 APICSHYAQNGICKFGPSCKFDHPM 386 589********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence |
MERYSGTQVM EGAPVDPVAE WTTPVGETGL EEPMWRLSLG GGTESYPERP NEADCMYYLK 60 TGFCGYGARC RFNHPRDRNL AVRAMRPTGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSQAP VALNVYGYPL RPGEKECSYY VKTGHCKFGV TCKFHHPPPV GEQMPLPTAG 180 PGPLLPPTPV AAPGIFPTVQ SPSVQSSQQY GVMPGNWPIS RPGLLPPGSY IPGTYSPMLI 240 PPGMVAVPGG WTPYPGPVNP VASPSTQPAG PGPVYGLTQL APPAPAYSGA YMSVGSSAGP 300 SGGNQKEHAY PQRPGLPECQ HYMKTGECKF GSSCRYHHPP EFSETKTNFL LSPMGLPLRP 360 GAPICSHYAQ NGICKFGPSC KFDHPMGALS YSPSASSLAD MPVAPYPVGS SIGTLAPSSS 420 SSDLRPELIS GSGSEAFSTQ TSSMSTSSGA VGSIFSNTGP ASHSGVQPSG QSSSGSGSTG 480 HGGEVHSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-134 | C3H family protein |