PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181110.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 468aa MW: 53141.8 Da PI: 4.9329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.7e-33	56	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+P+d+e++++ L+ kv ++ ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_019181110.1 56 LPRGVKFDPSDQEIIWHLLA-KVGLNDlkshpfID--EFIPTVNeddgICYTHPQNLP-GVKQDGTVSHFFHRAIKAYNTGTRKRRKIHgdnfgD 146 799**********66555.55555534543322..23444423345******.677888999**************865555558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y +++ k+ekt+Wvmh+y+l XP_019181110.1 147 VRWHKTGRTKPVVL-DGIQRGCKKIMVLYvsSAKGGKAEKTNWVMHQYHL 195 88********.99********6545666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MARPSWLVDS KRIATKIRSA SDDPGNINWK SNPTRTCPSC HYIIDNSDVT HEWPGLPRGV 60 KFDPSDQEII WHLLAKVGLN DLKSHPFIDE FIPTVNEDDG ICYTHPQNLP GVKQDGTVSH 120 FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVVL DGIQRGCKKI MVLYVSSAKG 180 GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKH SEKNELESPE ETECLDAKKD 240 PSTPKTATPD PLHTETRPSS FVAGLETPNI QHREVDYTKA DMEIPLEKGD NQDEITPNQT 300 EQMELQNENE GGEDRKWWDS ESQYLLDSQQ LVEGLSLCDE LLQSQSPNRD GDQNGKDHKS 360 TSCLSDYRHL GPENFKKDLE ECQELVLDVP PANQSGKEKK CMPHLSDYGH LGTENFKFLE 420 NSQELVLDPE NIMLDTPPDF RLSQLEFASQ DSYVAWGGNN IDPTEQGS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MARPSWLVDS KRIATKIRSA SDDPGNINWK SNPTRTCPSC HYIIDNSDVT HEWPGLPRGV  60
KFDPSDQEII WHLLAKVGLN DLKSHPFIDE FIPTVNEDDG ICYTHPQNLP GVKQDGTVSH  120
FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVVL DGIQRGCKKI MVLYVSSAKG  180
GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKH SEKNELESPE ETECLDAKKD  240
PSTPKTATPD PLHTETRPSS FVAGLETPNI QHREVDYTKA DMEIPLEKGD NQDEITPNQT  300
EQMELQNENE GGEDRKWWDS ESQYLLDSQQ LVEGLSLCDE LLQSQSPNRD GDQNGKDHKS  360
TSCLSDYRHL GPENFKKDLE ECQELVLDVP PANQSGKEKK CMPHLSDYGH LGTENFKFLE  420
NSQELVLDPE NIMLDTPPDF RLSQLEFASQ DSYVAWGGNN IDPTEQGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-176	NAC family protein