PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180927.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 994aa MW: 110138 Da PI: 7.2269

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C++dl++ k+yhrrhkvCevhska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_019180927.1 148 VCQVEDCQMDLTNSKDYHRRHKVCEVHSKATKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNSRRRKTHP 225 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD LFSAVPMNCI PSDCRSRQLF 60 PDESQIPANN GVPNGSDEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP 120 ITEGEMEKGE RKNGKKAKVA GGSSNRAVCQ VEDCQMDLTN SKDYHRRHKV CEVHSKATKA 180 LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGT 240 NYLLISLLKI LANMHGATNS SDQTKDQDIL SHLLRNLASM AGSNDERNPS GPLPISQDLH 300 NAGTSAGSPE KDSHQLVGNS ANLPTPEVLG KSMGAVNAEP GVSQNPSTQP ELIFPRKDCT 360 TFKAISTDNL VRQTKLHNID LNNVYDDSQD CMGVLKSSDH CQNPGNISSA CPLWVCQDPH 420 KSTSTRTSGN SASTSSFSPS NSSGEAQSRT DRIVFKLFGK DPSDFPIAMR KQIIDWLSNS 480 PTEIESYIRP GCVILTIYLR MDKSIWEELC CDLSSSLRKL LDSSSDSFWK TGWIYTRVQN 540 RVAFVFNGQV VLDTPLPVKG YNNCRISSVK PIAVPVSKGA QFLVKGFNLS RSTARFLCAL 600 DGKYLVQGNC GDMVEADSLV DQNDHNEIQS LSFPCSIPNV TGRGFIEVED HGLSGSFFPF 660 IVAEEDVCSE ICTLESSIDV AETASDSQEE PEKLEARNRA LDFIHDMGWL LHRSHLKFRS 720 GSNSSHFPFD RFRWLIEFSV DRDWCAVVKK LLDILFGGIV DAGEHSSLEM ALQDIGLLHQ 780 AVRGNCRRMV EALLQYCPDK GPDNSELVKT QHGGHYIFRP DAIVIGGLTP LHIVASQKGL 840 ENLLDALIND PGQVGVQAWK NARDSTGLTP NDYASLRGHY SYIHLIQKKT DPKPANVHVV 900 LDIPGDTSQK PKASSFQTEK LVTTKPSTRS CRRCEQKLQY GSCSTSLAIY RPAMLSMVAI 960 AAICVCVALL FKSSPEVLYV FQPFRWELLK YGSS

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD LFSAVPMNCI PSDCRSRQLF  60
PDESQIPANN GVPNGSDEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP  120
ITEGEMEKGE RKNGKKAKVA GGSSNRAVCQ VEDCQMDLTN SKDYHRRHKV CEVHSKATKA  180
LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGT  240
NYLLISLLKI LANMHGATNS SDQTKDQDIL SHLLRNLASM AGSNDERNPS GPLPISQDLH  300
NAGTSAGSPE KDSHQLVGNS ANLPTPEVLG KSMGAVNAEP GVSQNPSTQP ELIFPRKDCT  360
TFKAISTDNL VRQTKLHNID LNNVYDDSQD CMGVLKSSDH CQNPGNISSA CPLWVCQDPH  420
KSTSTRTSGN SASTSSFSPS NSSGEAQSRT DRIVFKLFGK DPSDFPIAMR KQIIDWLSNS  480
PTEIESYIRP GCVILTIYLR MDKSIWEELC CDLSSSLRKL LDSSSDSFWK TGWIYTRVQN  540
RVAFVFNGQV VLDTPLPVKG YNNCRISSVK PIAVPVSKGA QFLVKGFNLS RSTARFLCAL  600
DGKYLVQGNC GDMVEADSLV DQNDHNEIQS LSFPCSIPNV TGRGFIEVED HGLSGSFFPF  660
IVAEEDVCSE ICTLESSIDV AETASDSQEE PEKLEARNRA LDFIHDMGWL LHRSHLKFRS  720
GSNSSHFPFD RFRWLIEFSV DRDWCAVVKK LLDILFGGIV DAGEHSSLEM ALQDIGLLHQ  780
AVRGNCRRMV EALLQYCPDK GPDNSELVKT QHGGHYIFRP DAIVIGGLTP LHIVASQKGL  840
ENLLDALIND PGQVGVQAWK NARDSTGLTP NDYASLRGHY SYIHLIQKKT DPKPANVHVV  900
LDIPGDTSQK PKASSFQTEK LVTTKPSTRS CRRCEQKLQY GSCSTSLAIY RPAMLSMVAI  960
AAICVCVALL FKSSPEVLYV FQPFRWELLK YGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRL
2	218	223	SRRRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein