PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180910.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 315aa MW: 34532.4 Da PI: 8.9371

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.8e-41	26	102	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+p+v++ g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_019180910.1 26 CLVDGCNADLSRCREYHRRHKVCEVHSKTPKVTIGGREQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNRRRRKPQP 102 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MESSSSLSGS SKRAKAPGSV GQVAHCLVDG CNADLSRCRE YHRRHKVCEV HSKTPKVTIG 60 GREQRFCQQC SRFHSLAEFD EVKRSCRKRL DGHNRRRRKP QPDSLSKSSG MLFSGQQGTV 120 IAGAKLVSFS SSQMFPTSTV SSTWAGFSKA ENDHVVLYSN QSQPQPHLNY IDTQNQFKFM 180 QGSSEASSIS HQPLVDQGNS SSSQKFFAAG LMSQIVDSDR ALSLLSSASS VNREIGLSHV 240 VQPGAIPHPH SLVHYGGLTN YPFNAHEIET KPGADCHAKN TAHLQFHNVM QNAPTTDVSS 300 TGGPHHTHTF MWDQD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	100	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-49	SBP family protein