PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019180842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 157aa MW: 16357.4 Da PI: 10.8313 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.4e-19 | 32 | 66 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rk+++ XP_019180842.1 32 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKRRR 66 ********************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence |
MVDLSDRGSE SEDMSSQTPT PERETNTQIK TCADCGTTKT PLWRGGPAGP KSLCNACGIR 60 SRKRRRALLG LNKDDKKSKK SAGGGGSNKN SSGSSSDSGS SSGGISPGSG GGGRRFLPFG 120 REVALQKPRS QQARRKMGEV EKAAFLLMAL SCGSVFA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 62 | 66 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-28 | GATA family protein |